CX308710

Overview
NameCX308710
Unique NameCX308710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig957 contig Ccv1_Contig957:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LG G G SVL++V  F KA GK +    + RR GD    +A   KA+RELNW+    +DEM  D W+W S++P GY
Sbjct:  261 LGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LG G G SVL++VA F KA GK +    + RR GD    +A   KA  +L W+    +DEM  D W+W SKNP GY
Sbjct:  261 LGAGVGHSVLQVVAAFSKACGKPLAYHFAPRREGDLPAYWADATKAAEQLGWRVSRSLDEMAADTWHWQSKNPQGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = -3
Query:  288 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYESPN 527
            LGTGKG+SV ++   F K  GK +P    GRR GD   + AS  +A  EL WKA+  I + C D W W  +NP+G++  N
Sbjct:  273 LGTGKGSSVFDIYHAFCKEVGKDLPYEVVGRRTGDVLNLTASPNRANSELKWKAELSITDACRDLWKWTIENPFGFQIDN 352          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 37/76 (48.68%), Postives = 43/76 (56.58%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL M+  FE+ +GK IP     RRPGD    +AS E A  EL W AK  + +M  D W W   NP GY
Sbjct:  259 LGTGVGYSVLHMIKEFERITGKNIPFDIVSRRPGDIAECWASPELAHLELGWYAKRTLVDMLQDAWKWQKMNPNGY 334          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.505e-12
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV  FEKA+   I      RR GD    Y+    A +EL W A+ G+++M  D WNW   NP GY
Sbjct:  261 LGTGHGYSVLDMVKAFEKANNITIAYKLVERRSGDIATCYSDPSLAAKELGWVAERGLEKMMQDTWNWQKNNPKGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LG+G+ +SVLE++  FE ASG  IP     RR GD    YA    A+ ++ W+ +  + +M  D W W S NP GY+
Sbjct:  262 LGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLACFYADPSYAKAQIGWQTQRDLTQMMEDSWRWVSNNPNGYD 338          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LG+G G++V +++  F KA G+ +P   + RR GD   + A+  +A  EL WK    I E+C D W W  K PYG++
Sbjct:  271 LGSGTGSTVFQVLNAFSKAVGRDLPYKVTPRRAGDVVNLTANPTRANEELKWKTSRSIYEICVDTWRWQQKYPYGFD 347          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.623e-11
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LG+G+ +SVLE++  FE ASG  IP     RR GD    YA     + ++ W+ +  + +M  D W W S NP GY+
Sbjct:  262 LGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLACFYADPSYTKAQIGWQTQRDLTQMMEDSWRWVSNNPNGYD 338          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LG+G+ +SVLE++  FE ASG  IP     RR GD    YA     + ++ W+ +  + +M  D W W S NP GY+
Sbjct:  262 LGSGRASSVLEIIRAFEAASGLTIPYEVKPRRAGDLACFYADPSYTKAQIGWQTQRDLAQMMEDSWRWVSNNPNGYD 338          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 31/77 (40.26%), Postives = 43/77 (55.84%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LGTG GT+VL+M   F  A G     V + RR GD   + A  ++A  EL WK +  +++ C D W W   NP+GY+
Sbjct:  269 LGTGHGTTVLQMYRAFCDAIGFNFEYVVTARRDGDVLNLTAKCDRATNELEWKTELDVNKACVDLWKWTQDNPFGYQ 345          
The following BLAST results are available for this feature:
BLAST of CX308710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GALE_ECOLI1.328e-1346.05UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]
GALE_YERPE1.734e-1346.05UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GAL10_SCHPO1.734e-1343.75Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GALE_YEREN6.591e-1348.68UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_HAEIN2.505e-1246.05UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE_NEIMC5.579e-1240.26UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
YGRE_SCHPO1.623e-1138.96Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GALE_NEIMB1.623e-1138.96UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMA2.120e-1138.96UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GAL10_KLULA2.120e-1140.26Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]

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Properties
Property NameValue
Genbank descriptionC21003A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308710 ID=CX308710; Name=CX308710; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTGAAGAAAAGCTTTAAATTAATACTGAA
AATTTGAAAACCAATAACAGACAAACCAATGACACTTTTTCCAAATAACG
GATGCCTAATTAAATCTTCTCAGCAGAAGATTGTTCAGGGACCTTTTATT
GTTGTATGATACCACAAGGTTTTTTAGCTTAAAAATCTGGATAATTAAGT
ATGCATGATAAGCACGACACTGTATATAGCGAGAAACTACTGAAGACAAT
CAATAAGGATGACGAATGACAGCTATTAGTTAGTGGAGTTTGGAGATTCG
TAGCCATAAGGGTTCTTGCTGGCCCAATTCCATTGATCCCCGCACATCTC
GTCAATGCCATACTTTGCCTTCCAATTCAATTCGCGTTCTGCCTTTTCTG
TTGATGCATAAACAATCTCAGCGTCCCCAGGTCGCCTCCCAGACTTTACA
AGAGGAATTTTCTTTCCAGAGGCTTTTTCGAATACTGCAACCATCTCCAA
AACTGATGTCCCTTTTCCTGTTCCCAAGC
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