CX308710

Overview
NameCX308710
Unique NameCX308710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig957 contig Ccv1_Contig957:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY-GIDEMCGDQWNWASKNPYGYE 527
            LG+  G S L+++    K +GK+IP  K+ RRPGD +I+ AS+EKA   L WK ++  I+++    W W S +P GY+
Sbjct:  252 LGSSTGFSNLQILEAARKVTGKEIPAEKADRRPGDPDILIASSEKARTVLGWKPQFDNIEKIIASAWAWHSSHPKGYD 329          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LG+G+  SVLE++  FE ASG  IP     RR GD    YA     +++  W+ K G+ +M  D W W S+NP  Y
Sbjct:  261 LGSGRAYSVLEIIRAFEAASGLHIPYRIQPRRAGDLACSYADPSHTKQQTGWETKRGLQQMMEDSWRWVSRNPGRY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = -3
Query:  288 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKY-GIDEMCGDQWNWASKNPYGYESPN 527
            LG GKG SV E++ V  + +G  IP   + RR GD   + AS+EKA+  L W+ KY  ++ M    WNW  ++P+GY + N
Sbjct:  250 LGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPASLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGYSTEN 330          
The following BLAST results are available for this feature:
BLAST of CX308710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GALE_STRTR2.769e-1141.03UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
GALE_NEIGO3.616e-1140.79UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]
GALE_BACHD4.723e-1140.74UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]

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Properties
Property NameValue
Genbank descriptionC21003A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308710 ID=CX308710; Name=CX308710; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTGAAGAAAAGCTTTAAATTAATACTGAA
AATTTGAAAACCAATAACAGACAAACCAATGACACTTTTTCCAAATAACG
GATGCCTAATTAAATCTTCTCAGCAGAAGATTGTTCAGGGACCTTTTATT
GTTGTATGATACCACAAGGTTTTTTAGCTTAAAAATCTGGATAATTAAGT
ATGCATGATAAGCACGACACTGTATATAGCGAGAAACTACTGAAGACAAT
CAATAAGGATGACGAATGACAGCTATTAGTTAGTGGAGTTTGGAGATTCG
TAGCCATAAGGGTTCTTGCTGGCCCAATTCCATTGATCCCCGCACATCTC
GTCAATGCCATACTTTGCCTTCCAATTCAATTCGCGTTCTGCCTTTTCTG
TTGATGCATAAACAATCTCAGCGTCCCCAGGTCGCCTCCCAGACTTTACA
AGAGGAATTTTCTTTCCAGAGGCTTTTTCGAATACTGCAACCATCTCCAA
AACTGATGTCCCTTTTCCTGTTCCCAAGC
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