CX308727

Overview
NameCX308727
Unique NameCX308727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 50/152 (32.89%), Postives = 79/152 (51.97%), Query Frame = 3
Query:   15 QILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQD 470
            ++LVAN+GDS+A++C                     R  +AI+ S                       RDH PD+ DER R+E AGG+V+ W G  RV G LAVSRA GD   K Y V++ PE+ + + + ++  +L+ ASDG+++ ++ ++
Sbjct:  168 RLLVANVGDSRAVIC---------------------RGGDAIAVS-----------------------RDHKPDQSDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDKLLKQY-VVADPEIKE-EVVDSSLEFLILASDGLWDVVTNEE 272          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 3
Query:   15 QILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            ++ VAN+GDS+A++C                     R  NAI+ S                       +DH PD+ DER R+E AGG+V+ W G  RV G LAVSRA GD   K Y V+  PE+ + + +  +  +L+ ASDG+++ ++ ++  D+
Sbjct:  130 RLFVANVGDSRAIIC---------------------RGGNAIAVS-----------------------KDHKPDQTDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDKLLKQYVVVD-PEIRE-EVIDHSLEFLILASDGLWDVVTNEEAVDM 238          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  R+ AAGG V+ W G +RV G LA+SRAIGD   K Y VI  PEV   +     D +L+ ASDG+++ +S +  C+V
Sbjct:  225 LSCDHKPDRPDELERIHAAGGRVIFWDG-ARVFGMLAMSRAIGDSYLKPY-VICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNV 312          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C11_ARATH (Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQD 470
            L+ DH PDR DER R+E AGG+++ W G  RV G LAVSRA GD   K Y VI+ PE+ +    T    ++V ASDG++  LS +D
Sbjct:  249 LSDDHKPDRSDERQRIEDAGGFII-WAGTWRVGGILAVSRAFGDKQLKPY-VIAEPEIQEEDISTL--EFIVVASDGLWNVLSNKD 330          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  R+EAAGG V+ W G +RV G LA+SRAIGD   K Y V S PEVT  +  T +D  L+ ASDG+++ ++ +  C+V
Sbjct:  247 LSVDHKPDRPDELERIEAAGGRVIYWDG-ARVLGVLAMSRAIGDGYLKPY-VTSEPEVTVTER-TDDDECLILASDGLWDVVTNEMACEV 333          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 60/160 (37.50%), Postives = 74/160 (46.25%), Query Frame = 3
Query:    3 IAEGQILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            +    I+VAN GDS+A+LC                                         NG+A      L+ DH PDR DER R+EAAGG VL   G +RV G LA SRAIGD  Y    V   PEVT +    + D  LV ASDG+++ LS Q  CD+
Sbjct:  239 LTHDHIIVANTGDSRAVLCR----------------------------------------NGMAI----PLSNDHKPDRPDERARIEAAGGRVLVVDG-ARVEGILATSRAIGD-RYLKPMVAWEPEVT-FMRRESGDECLVLASDGLWDVLSSQLACDI 351          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            LT DH   REDER R+E  GG+V+ + G  RV G LAVSR IGD   K + V+S P+ T    + +   +L+ ASDG+++K+  Q+  D+
Sbjct:  259 LTSDHRASREDERERIENLGGFVVNYRGTWRVQGSLAVSRGIGDAHLKQW-VVSDPDTTT-LGVDSQCEFLILASDGLWDKVENQEAVDI 346          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C68_ORYSJ (Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            +L+ DH PDR DE  R+EAAGG V+ W G +RV G LA+SR+IGD   K Y V +VPEVT     +  D  L+ ASDG+++ +S +  C+V
Sbjct:  225 QLSSDHKPDRPDELERIEAAGGRVIFWEG-ARVLGVLAMSRSIGDAYLKPY-VTAVPEVT-VTGRSDFDECLILASDGLWDVVSNEAACEV 312          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR+DER R+EA GG V+QW G  RV+G LA+SR+IGD   K + VI  PEV        +D  L+ ASDG+++ +S ++ C V
Sbjct:  234 LSIDHKPDRKDERARIEAQGGKVIQWNGY-RVSGILAMSRSIGDRYLKPF-VIPKPEVM-VVPRAKDDDCLILASDGLWDVVSNEEACKV 320          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLS 461
            ++RDH PD+ DER R+E AGG+V+ W G  RV G LAVSRA GD   K Y V++ PE+ + + +     +L+ ASDG+++  S
Sbjct:  159 VSRDHKPDQSDERERIENAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQE-EKIDDTLEFLILASDGLWDVFS 238          
The following BLAST results are available for this feature:
BLAST of CX308727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
P2C59_ORYSJ3.174e-1332.89Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C45_ORYSJ3.174e-1332.05Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C30_ORYSJ3.174e-1347.78Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
P2C11_ARATH5.415e-1348.84Probable protein phosphatase 2C 11 OS=Arabidopsis ... [more]
P2C09_ORYSJ7.072e-1350.00Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C75_ARATH9.236e-1337.50Probable protein phosphatase 2C 75 OS=Arabidopsis ... [more]
P2C32_ORYSJ9.236e-1343.33Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C68_ORYSJ1.206e-1248.35Probable protein phosphatase 2C 68 OS=Oryza sativa... [more]
P2C50_ORYSJ1.206e-1247.78Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
P2C69_ARATH3.510e-1245.78Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC21003B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308727 ID=CX308727; Name=CX308727; organism=Citrus clementina; type=EST; length=490bp
TGATAGCAGAGGGCCAAATTTTAGTTGCCAACATTGGAGATTCAAAAGCT
CTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCTGAGGCCAAAGCTACTTT
ATTAAGGTTATACAGGAAGCGAAGGGATAATAATGCTATTTCAACTTCAC
AAGGTTATAATTACTTAAAATCCACAGTATCCAATGGACTTGCACATTTT
ACAGTCAAGGAACTGACAAGAGATCATCATCCGGATAGGGAAGATGAAAG
GTATCGAGTGGAGGCTGCCGGTGGTTATGTTCTTCAGTGGGGTGGTGTTT
CACGAGTAAATGGCCAGCTAGCTGTTTCCCGAGCTATTGGAGATTTATCT
TATAAAAGTTATGGTGTTATATCTGTGCCGGAGGTGACAGATTGGCAATC
TCTGACTGCCAATGATAGTTATCTGGTAGCTGCATCTGATGGTGTGTTTG
AAAAGCTGAGTTTGCAAGACATTTGTGATGTATTTTGGGA
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