CX308727

Overview
NameCX308727
Unique NameCX308727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 54/158 (34.18%), Postives = 75/158 (47.47%), Query Frame = 3
Query:    3 IAEGQILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDIC 476
            I   +I+VAN GDS+A+LC                     R+  A+                        L+ DH PDR DE  R++ AGG V+ W G +RV G LA+SRAIGD   K Y V S PEVT     T  D +L+ A+DG+++ ++ +  C
Sbjct:  241 ITPEKIIVANCGDSRAVLC---------------------RNGKAVP-----------------------LSTDHKPDRPDELDRIQEAGGRVIYWDG-ARVLGVLAMSRAIGDNYLKPY-VTSEPEVT-VTDRTEEDEFLILATDGLWDVVTNEAAC 351          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C49_ORYSJ (Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  R++AAGG V+ W G +RV G LA+SRAIGD   K Y V S PEVT  +    +D  L+ ASDG+++ ++ +  C+V
Sbjct:  247 LSVDHKPDRPDELERIKAAGGRVIYWDG-ARVLGVLAMSRAIGDGYLKPY-VTSEPEVTVTER-ADDDECLILASDGLWDVVTNEMACEV 333          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  RVEAAGG V+ W G  RV G LA SR+IGD   K + V + PEV   +  T  D +L+ ASDG+++ +S +  C +
Sbjct:  238 LSTDHKPDRPDELERVEAAGGRVINWNGY-RVLGVLATSRSIGDYYLKPF-VSAEPEVRVVER-TDKDEFLILASDGLWDVVSNEVACKI 324          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  201 TVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            T + LT DH+P + +E  R+EA GGYV    GV R+ G LAVSR IGD   K + VI+ PE T    +     +L+ ASDG+++K++ Q+  DV
Sbjct:  254 TAEALTSDHNPSQANELKRIEALGGYVDCCNGVWRIQGTLAVSRGIGDRYLKEW-VIAEPE-TRTLRIKPEFEFLILASDGLWDKVTNQEAVDV 345          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLS 461
            EL + H PDREDE+ R+EA GG V+ W G  RVNG L+VSRAIGD  +K Y  I     +    L   + YL+ A DG ++ ++
Sbjct:  359 ELMKPHKPDREDEKQRIEALGGCVV-WFGAWRVNGSLSVSRAIGDAEHKPY--ICGDADSASTVLDGTEDYLILACDGFYDTVN 439          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLS 461
            EL + H PDREDE+ R+EA GG V+ W G  RVNG L+VSRAIGD  +K Y  I     +    L   + YL+ A DG ++ ++
Sbjct:  359 ELMKPHKPDREDEKQRIEALGGCVV-WFGAWRVNGSLSVSRAIGDAEHKPY--ICGDADSASTVLDGTEDYLILACDGFYDTVN 439          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  195 HFTVKELTRDHHPDREDERYRVEAAGGYV-LQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICD 479
            H     LT DH P R+DER R+E++GGYV     GV RV   LAV+R+ GD   K + V++ PEV+      A   +LV ASDG++ K+S Q+  D
Sbjct:  262 HGAAAALTSDHTPARDDERSRIESSGGYVSCGSNGVWRVQDCLAVTRSFGDGGLKRW-VVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVD 356          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C37_ARATH (Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            L+ DH PDR DE  R++ AGG V+ W G +RV G LA+SRAIGD   K Y VI  PEVT     T  D  L+ ASDG+++ +  +  C V
Sbjct:  255 LSVDHKPDRPDELIRIQQAGGRVIYWDG-ARVLGVLAMSRAIGDNYLKPY-VIPDPEVT-VTDRTDEDECLILASDGLWDVVPNETACGV 341          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  207 KELTRDHHPDREDERYRVEAAGGYVLQW-GGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            K+++ DH PD + ER  +E+ GG+V    G V RVNG LAVSR  GD + K+Y + S PE+ D  ++ ++  +L+ ASDG+ + +S Q+  DV
Sbjct:  158 KQMSVDHDPDDDTERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGDKNLKAY-LNSEPEIKD-VTIDSHTDFLILASDGISKVMSNQEAVDV 248          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLS 461
            EL + H PDREDE+ R+EA GG ++ W G  RVNG L+VSRAIGD  +K Y  I     +    L   + YL+ A DG ++ ++
Sbjct:  373 ELMKPHKPDREDEKQRIEALGGCIV-WFGAWRVNGSLSVSRAIGDAEHKPY--ICGDADSASTVLDGTEDYLILACDGFYDTVN 453          
The following BLAST results are available for this feature:
BLAST of CX308727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
P2C03_ARATH5.987e-1234.18Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
P2C49_ORYSJ7.819e-1247.78Probable protein phosphatase 2C 49 OS=Oryza sativa... [more]
P2C51_ORYSJ1.021e-1146.67Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C30_ARATH1.021e-1143.62Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
PPM1E_RAT2.275e-1145.24Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE2.275e-1145.24Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C74_ORYSJ2.275e-1143.75Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
P2C37_ARATH2.275e-1147.78Protein phosphatase 2C 37 OS=Arabidopsis thaliana ... [more]
P2C17_ARATH2.275e-1141.94Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
PPM1E_HUMAN2.971e-1144.05Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]

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Properties
Property NameValue
Genbank descriptionC21003B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308727 ID=CX308727; Name=CX308727; organism=Citrus clementina; type=EST; length=490bp
TGATAGCAGAGGGCCAAATTTTAGTTGCCAACATTGGAGATTCAAAAGCT
CTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCTGAGGCCAAAGCTACTTT
ATTAAGGTTATACAGGAAGCGAAGGGATAATAATGCTATTTCAACTTCAC
AAGGTTATAATTACTTAAAATCCACAGTATCCAATGGACTTGCACATTTT
ACAGTCAAGGAACTGACAAGAGATCATCATCCGGATAGGGAAGATGAAAG
GTATCGAGTGGAGGCTGCCGGTGGTTATGTTCTTCAGTGGGGTGGTGTTT
CACGAGTAAATGGCCAGCTAGCTGTTTCCCGAGCTATTGGAGATTTATCT
TATAAAAGTTATGGTGTTATATCTGTGCCGGAGGTGACAGATTGGCAATC
TCTGACTGCCAATGATAGTTATCTGGTAGCTGCATCTGATGGTGTGTTTG
AAAAGCTGAGTTTGCAAGACATTTGTGATGTATTTTGGGA
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