CX308727

Overview
NameCX308727
Unique NameCX308727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 38/96 (39.58%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYG--------VISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDI 473
            +++ DH PD  +E+ R+E AGG+V       RVNG L +SRA+GDL YKS          +I+ P+V   + LT  D +++   DGVFE L+ Q++
Sbjct:  158 DMSVDHKPDNNEEKSRIERAGGFVSD----GRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTE-LTPQDKFILMGCDGVFETLNHQEL 248          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C77_ORYSJ (Probable protein phosphatase 2C 77 OS=Oryza sativa subsp. japonica GN=Os12g0198200 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWG-GVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDS--YLVAASDGVFEKLSLQDICD 479
            LT DH P REDER R+E+ GGYV   G GV RV   LAVSRA GD   K + V   PE T   SL A+    +LV ASDG++ K+S Q+  D
Sbjct:  284 LTSDHTPGREDERLRIESTGGYVSCGGSGVWRVQDSLAVSRAFGDAGVKQW-VTCEPE-TARVSLAADGDCRFLVLASDGLWCKVSNQEAVD 373          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C37_ORYSJ (Probable protein phosphatase 2C 37 OS=Oryza sativa subsp. japonica GN=Os04g0167900 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 3
Query:    3 IAEGQILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDICDV 482
            +   +++V+N GDS+A+LC      P  +    L      R    ++ ++G    K+  S G A      L+   HPDR DE+ R+EA GG V+   G  RV G LA+SRA+GD  Y    VI  P++T     T +D  L+ ASDG+++ +S +   DV
Sbjct:  249 LVRDRLVVSNCGDSRAVLCRAGDPLPLSSDHKGLNPSLSWRGTR-VALARGTWGDKTGQSVGPAALL---LSGGAHPDRPDEKARIEAVGGRVVYLNG-PRVRGILAMSRALGD-KYLKPEVICEPDIT-ITVRTVDDECLILASDGMWDVISNETASDV 401          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 3
Query:    9 EGQILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFE 452
            +  + +AN+GDS+A+LC  ++   ++  A L                                     L+++H+P + +ER R++ AGG V       RV G L VSR+IGD  YK  GV SVP++   Q LT ND +++ A DG+F+
Sbjct:  204 DNTLYIANLGDSRAILC--RYNEESQKHAAL------------------------------------SLSKEHNPTQYEERMRIQKAGGNVRD----GRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQ-LTPNDRFILLACDGLFK 308          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 3
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQD 470
            LT DH P R+DE+ R+E+ GGYV    G  RV G LAVSR+IGD   K + V++ PE T    L  +  +LV ASDG+++ +S Q+
Sbjct:  245 LTDDHKPGRDDEKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHLKKW-VVAEPE-TRVLELEQDMEFLVLASDGLWDVVSNQE 328          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   18 ILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFE 452
            + +AN+GDS+A+LC  ++   ++  A L                                     L+++H+P + +ER R++ AGG V       RV G L VSR+IGD  YK  GV SVP++   Q LT ND +++ A DG+F+
Sbjct:  229 LYIANLGDSRAILC--RYNEESQKHAAL------------------------------------SLSKEHNPTQYEERMRIQKAGGNVRD----GRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQ-LTPNDRFILLACDGLFK 330          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   18 ILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFE 452
            + +AN+GDS+A+LC  ++   ++  A L                                     L+++H+P + +ER R++ AGG V       RV G L VSR+IGD  YK  GV SVP++   Q LT ND +++ A DG+F+
Sbjct:  229 LYIANLGDSRAILC--RYNEESQKHAAL------------------------------------SLSKEHNPTQYEERMRIQKAGGNVRD----GRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQ-LTPNDRFILLACDGLFK 330          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 46/145 (31.72%), Postives = 71/145 (48.97%), Query Frame = 3
Query:   18 ILVANIGDSKALLCSEKFQSPAEAKATLLRLYRKRRDNNAISTSQGYNYLKSTVSNGLAHFTVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFE 452
            + +AN+GDS+A+LC  ++   ++  A L                                     L+++H+P + +ER R++ AGG V       RV G L VSR+IGD  YK  GV SVP++   Q LT ND +++ A DG+F+
Sbjct:  229 LYIANLGDSRAILC--RYNEESQKHAAL------------------------------------SLSKEHNPTQYEERMRIQKAGGNVRD----GRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQ-LTPNDRFILLACDGLFK 330          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 3
Query:  210 ELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYG--------VISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDI 473
            ++++DH PD E E+ R+E AGG+V       RVNG L++SRA+GDL YK           + ++P+V   Q L+A D +L+   DGVFE    Q I
Sbjct:  158 DMSKDHKPDDEQEKKRIERAGGFVSD----GRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQ-LSAADKFLLMGCDGVFETWDHQQI 248          
BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  201 TVKELTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYG--------VISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQDI 473
            T  +++ DH PD  +E+ R+E AGG+V       RVNG L +SRA+GDL YK           +I++P+V   + LT  D +++   DGVFE L+ Q++
Sbjct:  155 TNHDMSVDHKPDNPEEKSRIERAGGFVSD----GRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTE-LTPQDKFILMGCDGVFETLNHQEL 248          
The following BLAST results are available for this feature:
BLAST of CX308727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PP2C3_PARTE3.880e-1139.58Probable protein phosphatase 2C 3 OS=Paramecium te... [more]
P2C77_ORYSJ3.880e-1151.09Probable protein phosphatase 2C 77 OS=Oryza sativa... [more]
P2C37_ORYSJ3.880e-1134.38Probable protein phosphatase 2C 37 OS=Oryza sativa... [more]
ILKAP_BOVIN3.880e-1131.08Integrin-linked kinase-associated serine/threonine... [more]
P2C14_ARATH5.068e-1146.51Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]
ILKAP_RAT5.068e-1131.72Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE5.068e-1131.72Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_HUMAN5.068e-1131.72Integrin-linked kinase-associated serine/threonine... [more]
PP2C6_PARTE8.645e-1140.63Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C1_PARTE8.645e-1138.38Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]

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Properties
Property NameValue
Genbank descriptionC21003B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308727 ID=CX308727; Name=CX308727; organism=Citrus clementina; type=EST; length=490bp
TGATAGCAGAGGGCCAAATTTTAGTTGCCAACATTGGAGATTCAAAAGCT
CTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCTGAGGCCAAAGCTACTTT
ATTAAGGTTATACAGGAAGCGAAGGGATAATAATGCTATTTCAACTTCAC
AAGGTTATAATTACTTAAAATCCACAGTATCCAATGGACTTGCACATTTT
ACAGTCAAGGAACTGACAAGAGATCATCATCCGGATAGGGAAGATGAAAG
GTATCGAGTGGAGGCTGCCGGTGGTTATGTTCTTCAGTGGGGTGGTGTTT
CACGAGTAAATGGCCAGCTAGCTGTTTCCCGAGCTATTGGAGATTTATCT
TATAAAAGTTATGGTGTTATATCTGTGCCGGAGGTGACAGATTGGCAATC
TCTGACTGCCAATGATAGTTATCTGGTAGCTGCATCTGATGGTGTGTTTG
AAAAGCTGAGTTTGCAAGACATTTGTGATGTATTTTGGGA
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