CX308727

Overview
NameCX308727
Unique NameCX308727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX308727 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 3 
Query:  213 LTRDHHPDREDERYRVEAAGGYVLQWGGVSRVNGQLAVSRAIGDLSYKSYGVISVPEVTDWQSLTANDSYLVAASDGVFEKLSLQD 470
            L+ DH P+R DER R+E+AGG V+ W G  RV G LA+SRA G+   K + V++ PE+ + Q +     +L+ ASDG+++ +  +D
Sbjct:  355 LSEDHKPNRSDERKRIESAGG-VVMWAGTWRVGGVLAMSRAFGNRLLKQF-VVADPEIQE-QEIDDELEFLILASDGLWDVVPNED 437
The following BLAST results are available for this feature:
BLAST of CX308727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
P2C52_ORYSJ8.645e-1141.86Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC21003B06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308727 ID=CX308727; Name=CX308727; organism=Citrus clementina; type=EST; length=490bp
TGATAGCAGAGGGCCAAATTTTAGTTGCCAACATTGGAGATTCAAAAGCT
CTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCTGAGGCCAAAGCTACTTT
ATTAAGGTTATACAGGAAGCGAAGGGATAATAATGCTATTTCAACTTCAC
AAGGTTATAATTACTTAAAATCCACAGTATCCAATGGACTTGCACATTTT
ACAGTCAAGGAACTGACAAGAGATCATCATCCGGATAGGGAAGATGAAAG
GTATCGAGTGGAGGCTGCCGGTGGTTATGTTCTTCAGTGGGGTGGTGTTT
CACGAGTAAATGGCCAGCTAGCTGTTTCCCGAGCTATTGGAGATTTATCT
TATAAAAGTTATGGTGTTATATCTGTGCCGGAGGTGACAGATTGGCAATC
TCTGACTGCCAATGATAGTTATCTGGTAGCTGCATCTGATGGTGTGTTTG
AAAAGCTGAGTTTGCAAGACATTTGTGATGTATTTTGGGA
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