CX308743

Overview
NameCX308743
Unique NameCX308743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:676..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_KLULA (Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis GN=TRR1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.085e-25
Identity = 61/117 (52.14%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            GSKVY++ R+D  RAS+IMQ RA  N KI++++N V LEA G+               T +  DL V+GLF+AIGH PAT  + GQ+DL   GY+ T PG+T T+VPGVFAAGDVQD
Sbjct:  207 GSKVYMLVRKDHLRASQIMQRRAEQNEKIEILYNHVTLEAKGDGKYLNALKVKNVK--TNEEYDLPVNGLFYAIGHTPATNIVAGQVDLDEAGYVKTVPGSTLTNVPGVFAAGDVQD 321          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_PNEJI (Thioredoxin reductase OS=Pneumocystis jiroveci GN=TRR1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.417e-25
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +KVY++ RRD  RAS +M  R L +PKI+VIWN+VVL + G+               T  VS+L VSGLF+AIGHEPAT  + GQ++   +GYIITK G   T++ G FAAGDVQDK
Sbjct:  176 TKVYLLVRRDKLRASAVMAKRLLNHPKIEVIWNTVVLRSLGDGHLLNRLEIKNVK--TQVVSELHVSGLFYAIGHEPATALVRGQVECDDNGYIITKNGGPETNIKGFFAAGDVQDK 290          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_CHLTR (Thioredoxin reductase OS=Chlamydia trachomatis GN=trxB PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.417e-25
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            G +V+++HRRD+ RASK+M N+A  N KI  +WNS +++  G+               T   + ++ +G+FFAIGH+P T FL GQ+ L  +GYIIT+ G++ TSVPGVFAAGDVQDK
Sbjct:  173 GKRVFVVHRRDTLRASKVMVNKAQANEKIFFLWNSEIVKISGDTLVRSIDIYNNVDETT---TTMEAAGVFFAIGHQPNTAFLGGQVALDENGYIITEKGSSRTSVPGVFAAGDVQDK 287          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_CHLMU (Thioredoxin reductase OS=Chlamydia muridarum GN=trxB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.417e-25
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            G +V+++HRRD+ RASK M N+A  N KI  +WNS V++  G+               T     ++ +G+FFAIGH+P T FL GQL L  +GYIIT+ G++ TSVPGVFAAGDVQDK
Sbjct:  173 GKRVFVVHRRDTLRASKAMVNKAQANEKIVFLWNSEVVKILGDSLVRSIDIFNNVEKTT---VTMEAAGVFFAIGHQPNTAFLGGQLSLDENGYIITEKGSSRTSVPGVFAAGDVQDK 287          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_RICTY (Thioredoxin reductase OS=Rickettsia typhi GN=trxB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.157e-25
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +KV ++HRR+SFRA KI+Q+R   NPKI VIW+ V+ E  G                T +++ +  SG+F AIGH P T   +GQ+ +  D YIIT+ G+T TSV GVFAAGDVQDK
Sbjct:  169 NKVTVVHRRNSFRAEKILQDRLFKNPKISVIWDHVIDEIVGSNQPKTVTGVKIKNVYTNEINLVNCSGVFIAIGHTPNTTLFNGQIAIDDDNYIITQTGSTRTSVEGVFAAGDVQDK 285          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_ASHGO (Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.157e-25
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            GSKV+++ R+D  RAS IMQ R   N KI+V++N+  +EA G+               TG+ SDL V+GLF+AIGH PAT+ + GQ+DL   GY+ T PG+T T+VPG+FAAGDVQD
Sbjct:  177 GSKVFMLVRKDHMRASTIMQRRVERNEKIEVLYNTAPVEAKGDGSLLDALRVRDTR--TGEESDLPVNGLFYAIGHTPATQLVAGQVDLDESGYVKTVPGSTLTNVPGLFAAGDVQD 291          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_RICBR (Thioredoxin reductase OS=Rickettsia bellii (strain RML369-C) GN=trxB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.034e-25
Identity = 58/117 (49.57%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            SKV I+HRRD+FRA KI+Q R   NPKI VIW+ VV E  G                T + S +  SG+F AIGH+P T     Q+ + +D YIIT PG+T T++ GVFAAGDVQDK
Sbjct:  169 SKVTIVHRRDNFRAEKILQERLFKNPKISVIWDHVVEEIVGNNNPKSVTGVKIQNVHTKETSLVNCSGVFVAIGHKPNTALFAEQVTMDNDNYIITTPGSTKTNIEGVFAAGDVQDK 285          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB1_YEAST (Thioredoxin reductase 1 OS=Saccharomyces cerevisiae GN=TRR1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.200e-24
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD 351
            GSKV+++ R+D  RAS IMQ RA  N KI++++N+V LEA G+                 + +DL VSGLF+AIGH PATK + GQ+D    GYI T PG++ TSVPG FAAGDVQD
Sbjct:  177 GSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQD 291          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_RICPR (Thioredoxin reductase OS=Rickettsia prowazekii GN=trxB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.047e-24
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +KV ++HRR+SFRA KI+Q+R   NPKI VIW+ ++ E  G                T +++ +  SG+F AIGH P T    GQ+ +  D YI+T+ G+T T+V GVFAAGDVQDK
Sbjct:  169 NKVTVVHRRNSFRAEKILQDRLFKNPKISVIWDHIIDEIVGSNKPKAVTGVKIQNVYTNEINLVNCSGVFIAIGHAPNTALFKGQIAIDDDNYIVTQSGSTRTNVEGVFAAGDVQDK 285          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_NEUCR (Thioredoxin reductase OS=Neurospora crassa GN=cys-9 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.777e-24
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 GSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            GS V ++ R+D  RAS IM +R L + K+ V +N+V +E  G+               TG+   L+ +GLF+AIGH+PAT  + GQL+  +DGY++TKPGTT TSV GVFAAGDVQDK
Sbjct:  175 GSHVTVLVRKDKLRASSIMAHRLLNHEKVTVRFNTVGVEVKGDDKGLMSHLVVKDVT-TGKEETLEANGLFYAIGHDPATALVKGQLETDADGYVVTKPGTTLTSVEGVFAAGDVQDK 291          
The following BLAST results are available for this feature:
BLAST of CX308743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXB_KLULA1.085e-2552.14Thioredoxin reductase, mitochondrial OS=Kluyveromy... [more]
TRXB_PNEJI1.417e-2551.28Thioredoxin reductase OS=Pneumocystis jiroveci GN=... [more]
TRXB_CHLTR1.417e-2547.46Thioredoxin reductase OS=Chlamydia trachomatis GN=... [more]
TRXB_CHLMU1.417e-2549.15Thioredoxin reductase OS=Chlamydia muridarum GN=tr... [more]
TRXB_RICTY3.157e-2547.86Thioredoxin reductase OS=Rickettsia typhi GN=trxB ... [more]
TRXB_ASHGO3.157e-2550.43Thioredoxin reductase OS=Ashbya gossypii GN=TRR1 P... [more]
TRXB_RICBR7.034e-2549.57Thioredoxin reductase OS=Rickettsia bellii (strain... [more]
TRXB1_YEAST1.200e-2451.28Thioredoxin reductase 1 OS=Saccharomyces cerevisia... [more]
TRXB_RICPR2.047e-2445.30Thioredoxin reductase OS=Rickettsia prowazekii GN=... [more]
TRXB_NEUCR7.777e-2448.31Thioredoxin reductase OS=Neurospora crassa GN=cys-... [more]

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Properties
Property NameValue
Genbank descriptionC21003C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308743 ID=CX308743; Name=CX308743; organism=Citrus clementina; type=EST; length=355bp
GGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTTAGAGCTTCGAA
GATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGATGTGATTTGGA
ATTCGGTTGTTTTAGAGGCTTATGGAGAAGGGGATAAGAAGGTTCTGGGA
GGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCTGATTTGAAGGT
GTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTACTAAGTTTTTGG
ATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTACCAAACCTGGG
ACTACACACACTAGTGTCCCTGGAGTGTTTGCTGCTGGAGATGTTCAGGA
TAAGA
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