CX308743

Overview
NameCX308743
Unique NameCX308743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length355
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15055 contig Ccv1_Contig15055:676..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAM (Thioredoxin reductase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVPG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSVPGIFAAGDVRDK 281          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAC (Thioredoxin reductase OS=Staphylococcus aureus (strain COL) GN=trxB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 52/118 (44.07%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVPG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSVPGIFAAGDVRDK 281          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_LISIN (Thioredoxin reductase OS=Listeria innocua GN=trxB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.772e-13
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  + K+D IWN+ V E  G+                G  S + V G+F  +G  P TK          +GYI+T      T++PG+FAAGDV+ K
Sbjct:  171 KVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNNTVEEIIGD--GKKVTSVKLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLSLGITDEEGYIVTDE-EMRTNLPGIFAAGDVRAK 283          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_VIBCH (Thioredoxin reductase OS=Vibrio cholerae GN=trxB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.621e-13
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    4 SKVYIIHRRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            S+V+++HRRDSFR+ KI+ +R +    N  I +  +  + E  G+               +    +L V G+F AIGH+P ++  +GQL++  +GYI+ K G     T TS+ GVFAAGDV D
Sbjct:  170 SEVHLVHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQ--SDMTENLDVMGVFIAIGHQPNSQIFEGQLEM-KNGYIVVKSGLEGNATQTSIEGVFAAGDVMD 289          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_STAAR (Thioredoxin reductase OS=Staphylococcus aureus (strain MRSA252) GN=trxB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 51/118 (43.22%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT-KFLDGQLDLHSD-GYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E                G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TS PG+FAAGDV+DK
Sbjct:  169 KVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD--LGITNDVGYIVTKDDMT-TSAPGIFAAGDVRDK 281          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_CLOLI (Thioredoxin reductase OS=Clostridium litorale GN=trxB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.067e-13
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS------GLFFAIGHEPATKFLDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            KV I+HRR   RA+K +Q +A  N K++ +WN+V+ E  G+               TG+V++          G+F  IG++P +  ++G+L+L   GYI T      T+V GVFAAGD++ K
Sbjct:  169 KVTIVHRRAELRAAKSIQEKAFKNEKLNFMWNTVIEEIKGD---GIVESAVFKNRETGEVTEFVAPEEDGTFGIFVFIGYDPKSALVEGKLELDETGYIPT-DDNMKTNVEGVFAAGDIRVK 286          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.376e-12
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPGT----THTSVPGVFAAGDVQD 351
            K+Y+IHRR++F+A KI+ +R L      K+ +  NS + +  G                  +   + VSGLF AIG+ P T     QL +  DGYI  K GT    T T++PGVFAAGDV D
Sbjct:  171 KIYLIHRRNNFKAEKILIDRLLKIVKTKKVILHLNSTIEDILGNNKGVTHLLIKNKNLKEKKKLKIAVSGLFVAIGYIPNTDIFTDQLKM-KDGYIKIKKGTHGNYTQTNIPGVFAAGDVID 291          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_TREPA (Thioredoxin reductase OS=Treponema pallidum GN=trxB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.829e-12
Identity = 47/117 (40.17%), Postives = 60/117 (51.28%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFL-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 354
            +V +IHRRD+ RA K +  R L NP I V WN+ +    GE               TG+  +L    +FF IG  P T  L D + D  S GYI+T      TSV G+FAAGDV+ K
Sbjct:  169 RVTMIHRRDTLRAQKAIAERTLKNPHIAVQWNTTLEAVRGE---TKVSSVLLKDVKTGETRELACDAVFFFIGMVPITGLLPDAEKD--STGYIVT-DDEMRTSVEGIFAAGDVRAK 279          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_BUCBP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNS--VVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQD 351
            KVY+IHRR +F A KI+ +R L   K ++I  +  +V +  G                  +   + +SG+F AIGH P TK    QL + +D YI+ K G     T T++PG+FAAGDV D
Sbjct:  176 KVYLIHRRKTFSAEKILISRMLNKTKKNIILRTGCIVNKIIGGVNGVRGVQITCNDSKENKCL-INLSGVFIAIGHAPNTKLFKNQLFMKND-YILVKSGIHGNVTQTNIPGIFAAGDVID 294          
BLAST of CX308743 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAI (Thioredoxin reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.426e-11
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    7 KVYIIHRRDSFRASKIMQNRA---LTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFLDGQLDLHSDGYI-ITKP---GTTHTSVPGVFAAGDVQD 351
            KV++IHR  +FRA KI+ +R    + + KI +  NS+V    G                    S ++VSGLF AIG+ P T     +L +  DGYI +T+      T TS+PG+FAAGDV D
Sbjct:  171 KVHLIHRGINFRAEKILLDRLEKKIKSQKIIIYLNSIVKNILGNSSGVTALLIEQKNSKEKTESKIQVSGLFVAIGYTPNTNIFVNKLKM-KDGYIQVTRQEHGNYTQTSIPGIFAAGDVID 291          
The following BLAST results are available for this feature:
BLAST of CX308743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
TRXB_STAAM2.772e-1344.07Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_STAAC2.772e-1344.07Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_LISIN2.772e-1337.93Thioredoxin reductase OS=Listeria innocua GN=trxB ... [more]
TRXB_VIBCH3.621e-1336.59Thioredoxin reductase OS=Vibrio cholerae GN=trxB P... [more]
TRXB_STAAR8.067e-1343.22Thioredoxin reductase OS=Staphylococcus aureus (st... [more]
TRXB_CLOLI8.067e-1335.25Thioredoxin reductase OS=Clostridium litorale GN=t... [more]
TRXB_BUCAP1.376e-1238.52Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_TREPA6.829e-1240.17Thioredoxin reductase OS=Treponema pallidum GN=trx... [more]
TRXB_BUCBP1.165e-1137.19Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_BUCAI4.426e-1137.70Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21003C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21003C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308743 ID=CX308743; Name=CX308743; organism=Citrus clementina; type=EST; length=355bp
GGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTTAGAGCTTCGAA
GATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGATGTGATTTGGA
ATTCGGTTGTTTTAGAGGCTTATGGAGAAGGGGATAAGAAGGTTCTGGGA
GGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCTGATTTGAAGGT
GTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTACTAAGTTTTTGG
ATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTACCAAACCTGGG
ACTACACACACTAGTGTCCCTGGAGTGTTTGCTGCTGGAGATGTTCAGGA
TAAGA
back to top