CX308747

Overview
NameCX308747
Unique NameCX308747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.071e-17
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    KA++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKANGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.387e-17
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.071e-17
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 2
Query:   92 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V   RKAI+++VP    K+++KI  RLVRELEKKFSGK
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGK 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_DICDI (40S ribosomal protein S7 OS=Dictyostelium discoideum GN=rps7 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.070e-17
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  107 KKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KKI K      TEFE TVAQAL DLEN N ELK DLKDL +    ++DV+ ++KA+V++VP+R  K Y KI  +L  E+EKK  GK
Sbjct:    4 KKIIKPAGKVATEFENTVAQALVDLENNNAELK-DLKDLSVCSVKEVDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGK 88          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_SPOFR (40S ribosomal protein S7 OS=Spodoptera frugiperda GN=RpS7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KI K   AEP  FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK
Sbjct:    4 KIIKASAAEPDVFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGK 86          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.678e-16
Identity = 42/85 (49.41%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            K+ K  + EP  FE  + QA+ +LE  N +LK  L+DLYI +A +++ + N+KAI++YVP   +KA++K+ +RLVRELEKKFSGK
Sbjct:    6 KVIKAGNGEPDAFETQIGQAILELE-MNSDLKPQLRDLYITRAREVEFN-NKKAIIIYVPVPKQKAFQKVQTRLVRELEKKFSGK 88          
The following BLAST results are available for this feature:
BLAST of CX308747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_ICTPU1.071e-1750.5540S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]
RS7_RAT2.387e-1749.4540S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE2.387e-1749.4540S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN2.387e-1749.4540S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA2.387e-1749.4540S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN2.387e-1749.4540S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_XENLA4.071e-1749.4540S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_DICDI9.070e-1753.4940S ribosomal protein S7 OS=Dictyostelium discoide... [more]
RS7_SPOFR3.447e-1652.9440S ribosomal protein S7 OS=Spodoptera frugiperda ... [more]
RS7_ANOGA7.678e-1649.4140S ribosomal protein S7 OS=Anopheles gambiae GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC21003D04Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308747 ID=CX308747; Name=CX308747; organism=Citrus clementina; type=EST; length=369bp
GCGGGGCTCCCTTTGTTAGTAGCAGCAGCAAGCTTGTGTGTTTTTTCTAC
TCGTGCATACAGATCTAAAAGCTTTGCTGCGAGTTGTCAAGATGTTCACG
ACTAAGAAGAAAATCCAAAAAGACAAGGATGCCGAACCTACTGAGTTTGA
GGAGACAGTTGCCCAGGCACTGTTTGATTTGGAGAATACCAACCAGGAGC
TTAAAAGTGACTTGAAAGATCTTTACATTAATCAAGCCATTCAAATGGAT
GTTTCTGGAAACCGCAAGGCAATTGTTGTCTATGTGCCTTACAGATTGAG
GAAGGCTTATCGGAAGATTCATTCTCGCCTTGTGAGAGAGCTGGAGAAGA
AATTCAGTGGCAAGGATGT
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