CX308747

Overview
NameCX308747
Unique NameCX308747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            K+ K   AEP  FE  + QA+ +LE  N +LK  L+DL+I +A +++ + N+KAIV+YVP   +KA++K+ +RLVRELEKKFSGK
Sbjct:    6 KVIKSGGAEPDAFEGQIGQAILELE-MNSDLKPQLRDLHITRAREIEFN-NKKAIVIYVPVPKQKAFQKVQTRLVRELEKKFSGK 88          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/85 (45.88%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KI K   ++PTE +  VAQ L+DLE++++++  +L+ L I  A +++V G +KAIVV+VP  L KA+ K  +RL RELEKKF+ +
Sbjct:    6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADR 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_MANSE (40S ribosomal protein S7 OS=Manduca sexta GN=RpS7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 43/85 (50.59%), Postives = 62/85 (72.94%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KI K    E   FE +++QAL +LE TN +LK+ L++LYI +A ++++  N+K+I++YVP    KA++KI  RLVRELEKKFSGK
Sbjct:    4 KILKAGGTEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGK 86          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_DROYA (40S ribosomal protein S7 OS=Drosophila yakuba GN=RpS7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 41/85 (48.24%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGK 88          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_DROME (40S ribosomal protein S7 OS=Drosophila melanogaster GN=RpS7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 41/85 (48.24%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            KI K   ++P +FE+++AQAL +LE  N +LK  L+DL+I +A +++  G++KA+++YVP   +K ++KI   LVRELEKKFSGK
Sbjct:    6 KIIKPGGSDPDDFEKSIAQALVELE-ANSDLKPYLRDLHITRAREIEF-GSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGK 88          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_CAEEL (40S ribosomal protein S7 OS=Caenorhabditis elegans GN=rps-7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 2
Query:  110 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKD 367
            K+ K      +E E+ V+QAL DLE TN +++S LK+LYI    ++++ GN+ AI++YVP    KA+ KIH  LVRELEKKF G+D
Sbjct:    7 KLLKSDGKVVSEIEKQVSQALIDLE-TNDDVQSQLKELYIVGVKEVEL-GNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRD 90          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7B_YEAST (40S ribosomal protein S7-B OS=Saccharomyces cerevisiae GN=RPS7B PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.946e-13
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  137 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKF 355
            P+E E  VA+   DLE+++ ELK+DL+ L I    ++DV+G +KA+V++VP     AY K+ ++L RELEKKF
Sbjct:   13 PSELELQVAKTFIDLESSSPELKADLRPLQIKSIREIDVTGGKKALVLFVPVPALSAYHKVQTKLTRELEKKF 85          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7A_YEAST (40S ribosomal protein S7-A OS=Saccharomyces cerevisiae GN=RPS7A PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 5.150e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  137 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            PTE E  VAQA  +LEN++ ELK++L+ L      ++DV+G +KA+ ++VP      + K+ ++L RELEKKF  +
Sbjct:   13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDR 88          
BLAST of CX308747 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.437e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  137 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGK 364
            P+E E  VA AL+DLE+   +LK+ L+ L    A +++V   +KAIV++VP    + + ++  RL RELEKKFS +
Sbjct:   19 PSELETAVAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDR 94          
The following BLAST results are available for this feature:
BLAST of CX308747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_CULQU1.003e-1550.5940S ribosomal protein S7 OS=Culex quinquefasciatus... [more]
RS7_SCHPO2.918e-1545.8840S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_MANSE4.977e-1550.5940S ribosomal protein S7 OS=Manduca sexta GN=RpS7 ... [more]
RS7_DROYA1.891e-1448.2440S ribosomal protein S7 OS=Drosophila yakuba GN=R... [more]
RS7_DROME1.891e-1448.2440S ribosomal protein S7 OS=Drosophila melanogaste... [more]
RS7_CAEEL2.470e-1448.8440S ribosomal protein S7 OS=Caenorhabditis elegans... [more]
RS7B_YEAST7.946e-1346.5840S ribosomal protein S7-B OS=Saccharomyces cerevi... [more]
RS7A_YEAST5.150e-1242.1140S ribosomal protein S7-A OS=Saccharomyces cerevi... [more]
RS7_NEUCR7.437e-1142.1140S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC21003D04Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308747 ID=CX308747; Name=CX308747; organism=Citrus clementina; type=EST; length=369bp
GCGGGGCTCCCTTTGTTAGTAGCAGCAGCAAGCTTGTGTGTTTTTTCTAC
TCGTGCATACAGATCTAAAAGCTTTGCTGCGAGTTGTCAAGATGTTCACG
ACTAAGAAGAAAATCCAAAAAGACAAGGATGCCGAACCTACTGAGTTTGA
GGAGACAGTTGCCCAGGCACTGTTTGATTTGGAGAATACCAACCAGGAGC
TTAAAAGTGACTTGAAAGATCTTTACATTAATCAAGCCATTCAAATGGAT
GTTTCTGGAAACCGCAAGGCAATTGTTGTCTATGTGCCTTACAGATTGAG
GAAGGCTTATCGGAAGATTCATTCTCGCCTTGTGAGAGAGCTGGAGAAGA
AATTCAGTGGCAAGGATGT
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