CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_SCLS1 (ATP-dependent RNA helicase fal1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=fal1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 56/142 (39.44%), Postives = 89/142 (62.68%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 467
            L DL D+L   Q VIF  +  +   L   + + NF  + +H  M Q+ER +    F+ GN R+L++TD+  RGID+++V++VINYD+P   + Y+HR+GR+GRFG KG+AI  V+   D D L  ++  + + IKE+P  ++
Sbjct:  256 LCDLYDSLTITQAVIFCNTKVKVNWLTDQMKKANFTVVAMHGDMKQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTK-EDVDELRDIERFYRIRIKEMPVNVN 396          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_BOTFB (ATP-dependent RNA helicase fal1 OS=Botryotinia fuckeliana (strain B05.10) GN=fal1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.173e-26
Identity = 65/160 (40.62%), Postives = 91/160 (56.88%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+G +GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  312 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 64/160 (40.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + S +D   L +++     +IK +P  ID   Y+
Sbjct:  245 YYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYSLYKIEQELGTEIKPIPATIDRKLYV 403          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 54/138 (39.13%), Postives = 90/138 (65.22%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 455
            L D+ D+L   Q VIF  +  +   L++ L++ NF  + +H  M QEER      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  256 LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 54/138 (39.13%), Postives = 90/138 (65.22%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 455
            L D+ D+L   Q VIF  +  +   L++ L++ NF  + +H  M QEER      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++ A D   L +++  + + I  +P
Sbjct:  256 LCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKA-DLAKLREIEKFYSIKINPMP 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 55/143 (38.46%), Postives = 90/143 (62.94%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470
            L DL D+L   Q VIF  +  +   L+  L++ NF    IH  M Q++R      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F+ +  +   L  ++  + + IK +P  ID+
Sbjct:  255 LCDLYDSLTITQCVIFCNTKKKVDWLSHKLIQNNFAVASIHGDMKQDDRDKVMSDFRSGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFI-TREEVTKLKSIEKHYSIKIKPMPADIDS 396          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   LD NQ +IF  S  R   L + + E  +     H+ M Q  R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  G+AI  + + +D   L +++     +IK +P QID + Y+
Sbjct:  243 YYAFVDEKQKLHCLNTLFSKLDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLI-NWNDRYNLYKIEQELGTEIKPIPAQIDKNLYV 401          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 9.295e-26
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS*WRSV 503
            +Y  + E +K   LN L   L  NQ +IF  S  R   L K + E  +    IH+ M+Q  R   +  F++G  R LV +DL  RGID++ VN+VIN+D P  A+TYLHR+GR+GRFG  G+AI  ++     D L++++     +IK +P+ ID + Y+ +   SV
Sbjct:  273 YYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFD-LHRIEKELGTEIKPIPKVIDPALYVANVGASV 438          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_SCLS14.173e-2641.13ATP-dependent RNA helicase fal1 OS=Sclerotinia scl... [more]
FAL1_DEBHA4.173e-2639.44ATP-dependent RNA helicase FAL1 OS=Debaryomyces ha... [more]
FAL1_BOTFB4.173e-2641.13ATP-dependent RNA helicase fal1 OS=Botryotinia fuc... [more]
DDX6_PONAB4.173e-2640.63Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DHH1_PICST5.449e-2640.00ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
FAL1_YEAST9.295e-2639.13ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS79.295e-2639.13ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_ASHGO9.295e-2638.46ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
DHH1_YARLI9.295e-2639.38ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DDX6_DROME9.295e-2638.32Putative ATP-dependent RNA helicase me31b OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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