CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASPCL (ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus GN=dhh1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + +  D   L +++     +I+ +P+ ID   Y+
Sbjct:  262 YYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI-NWEDRFNLYKIEQELGTEIQPIPQNIDKKLYV 420          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 59/159 (37.11%), Postives = 94/159 (59.12%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +I + E  K   L DL + +   Q VIF  +  +   + + L + N     +H+ M + +R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++  +   I ELP  +D + Y+
Sbjct:  246 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEGHYHTQIDELP--VDFAAYL 401          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASPOR (ATP-dependent RNA helicase eIF4A OS=Aspergillus oryzae GN=tif1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  265 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 417          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  242 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  242 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  265 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 417          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  240 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQSQRDIIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            YI + + E K   L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  242 YIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 56/141 (39.72%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L++ +   NF    +H  M Q+ER      F+ G+ R+L+ TD+  RGID+++V++VINYD+P++ + Y+HR+GR+GRFG KG+AI FV S  D  IL  ++  +   I E+P  +
Sbjct:  265 LCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS-DDIKILRDIEQYYSTQIDEMPMNV 404          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 54/141 (38.30%), Postives = 88/141 (62.41%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L+DL + +   Q VIF  +  +   L   L   +F    +H  M Q +R    K F+ G+ R+L+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV +A D  ++ +++  +   I+E+P  +
Sbjct:  253 LSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV-TADDVRMMREIEQFYSTQIEEMPMNV 392          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_ASPCL3.532e-2538.75ATP-dependent RNA helicase dhh1 OS=Aspergillus cla... [more]
IF4A_LEIBR4.613e-2537.11Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_ASPOR4.613e-2537.66ATP-dependent RNA helicase eIF4A OS=Aspergillus or... [more]
IF4A_ASPCL4.613e-2537.66ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_NEOFI6.025e-2537.66ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_EMENI6.025e-2537.66ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPTN6.025e-2537.66ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_ASPFU6.025e-2537.66ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
RH2_ARATH7.869e-2539.72DEAD-box ATP-dependent RNA helicase 2 OS=Arabidops... [more]
IF4A_PHANO7.869e-2538.30ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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