CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.797e-53 Identity = 104/161 (64.60%), Postives = 127/161 (78.88%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 482 +YIKL E EKNRKL LLD L+FNQV+IFVKS SRA EL KLL NFP+I +H M QEER+ RYK FK+ KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVS+ D ++L+++Q RF+V I E PE+ ID STY+ Sbjct: 277 YYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 437
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53 Identity = 104/161 (64.60%), Postives = 126/161 (78.26%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 482 +YIKL E EKNRKL LLD L+FNQV+IFVKS +RA EL KLL NFP+I +H M QEER+ RYK FK+ KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+ Sbjct: 284 YYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.347e-53 Identity = 104/161 (64.60%), Postives = 126/161 (78.26%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 482 +YIKL E EKNRKL LLD L+FNQV+IFVKS +RA EL KLL NFP+I +H M QEER+ RYK FK+ KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+ Sbjct: 284 YYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.066e-53 Identity = 104/161 (64.60%), Postives = 124/161 (77.02%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 482 +YI+L E EKNRKL LLD L+FNQV+IFVKS RA EL KLL NFP+I +H M QEER+ RYK FKE KRI V+TD+ GRGIDIER+N+ INYDMP AD YLHRVGRAGRFGTKGLAI+ VSS D ++L ++Q RF+V I E PE+ +D STY+ Sbjct: 276 YYIRLEEREKNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMRQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKDDEEVLAKIQERFDVKITEFPEEGVDPSTYL 436
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 6.830e-53 Identity = 104/161 (64.60%), Postives = 123/161 (76.40%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 482 +Y KL E EKNRKL LLD L+FNQV+IFVKS RA EL KLL E NFP+I +H M Q ER+ RYK FKE KRI V+TD+ GRGIDIER+N+ INYD+ AD YLHRVGRAGRFGTKGLAI+FVSS D ++L ++Q RF+V I E PE+ ID STY+ Sbjct: 279 YYTKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGHMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 439
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50 Identity = 100/163 (61.35%), Postives = 124/163 (76.07%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMPS 488 +Y+ + E KNRKL DLLD L+FNQV+IFVKS SRA L+++L FP +HSG+ QEER+ RYK FKE KRI V+TD+ GRGIDIER+N+ INYD+P AD YLHRVGRAGRFGTKGLAI+FVS+ D ++L ++Q RFEV+I P E +D STYM S Sbjct: 279 YYVDVEEKSKNRKLGDLLDNLEFNQVIIFVKSTSRANGLSQVLNANGFPCTAVHSGIPQEERIARYKEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYMNS 441
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29 Identity = 64/155 (41.29%), Postives = 100/155 (64.52%), Query Frame = 3 Query: 3 HYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 +Y+ + E + K L DL D++ Q VIF + + EL + L E NF I+S + Q+ER T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++ + I+ELP I Sbjct: 238 YYVNVEEEQYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTN-KDIGAMRELERFYSTQIEELPSSI 391
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28 Identity = 63/154 (40.91%), Postives = 99/154 (64.29%), Query Frame = 3 Query: 6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 YI + E + K L+DL D++ Q VIF + + EL + L E NF I+S + Q+ER K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++ + I+ELP + Sbjct: 239 YINVEEEQYKFDCLSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMREIEKFYSTQIEELPADV 391
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.613e-28 Identity = 64/156 (41.03%), Postives = 98/156 (62.82%), Query Frame = 3 Query: 6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470 Y+ + E + K L DL D++ Q VIF + + EL + L NF I+S + Q+ER T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F+ + D L +++ + I+ELP I T Sbjct: 239 YVNVEEEQFKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVN-EDVQALRELEQFYSTQIEELPSDIGT 393
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28 Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 3 Query: 6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470 Y+ + E E K L DL D++ Q VIF + + EL L F I+S + Q+ER T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++ + I+ELP I T Sbjct: 238 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIAT 392 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |