CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 449
            Y+ L    K+  L  LL+       +IF ++      ++ LL    F +I +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G+AI+FV+   D +I  +++      +KE
Sbjct:  271 YLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ-YDVEIWLRIEGALGKKLKE 417          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 449
            Y+ L    K+  L  LL+       +IF ++      ++ LL    F +I +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G+AI+FV+   D +I  +++      +KE
Sbjct:  271 YLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ-YDVEIWLRIEGALGKKLKE 417          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 425
            LND  D     +++IFV+    A EL   L+   +P + IH G  Q +R    + F   N    IL+AT +  RG+D++ +N+VINY+     + Y+HRVGR GR G KG AITFVSS     I + V+A
Sbjct:  565 LNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKA 694          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 3
Query:   42 LNDLLDALDFN---QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395
            L +L+  LD N   ++V+FV     A +L  +L         +H  ++QE+RL     FK     +L+ TDL  RG+DI ++ +VINYDMP S + YLHRVGR  R G +G +ITFV  AS
Sbjct:  442 LFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEAS 562          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 3
Query:   15 LSELEKNRKLNDLLDALDF-------NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD------SDILNQVQARFEVDIKELPE 458
            L +  + RK + L  AL +       ++VV+FV     A  L  +L         +H  ++QE+RL   K FK     +L+ TDL  RG+DI ++ +VINYDMP + + YLHRVGR  R G  G +ITFV  +S       S I+N       VD K+  E
Sbjct:  348 LQQFVRIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKSAIVNGKGVAKTVDWKQAEE 508          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   30 KNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVE--CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            K +KL ++L D   F   V+        A+L    V+      S  IHS  SQ ER    KG  EG+  ++V+T ++GRG+D+  V +V+N+DMP S D Y+H+VGR GR G  G AITF+++ S   +   V  R +     LP Q+  S Y+
Sbjct:  399 KKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNS-KRLFWDVAKRVKPTGSILPPQLLNSPYL 551          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLL--DALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461
            YIK+    K   L+  L  +A     V++F    S A  L+ LL         +HS + Q +R+     F+    RILVATD+  RG+DI  V++VINYD+P   D Y+HRVGR  R G KG A++FV    D ++   ++ R   D++   E+
Sbjct:  348 YIKVPVTHKEHYLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVSFVGQ-RDVELALTIEKRVGRDMEAWEEE 500          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 443
            E  K   L +L + L   Q +IF      A  + + + +       +H  +   +R      F++G  ++L++T+++ RGIDI++V +VINYDMP        A+TYLHR+GR GRFG KG++I FV        ++Q++   +  I
Sbjct:  286 EDHKYEVLVELYNLLTIGQSIIFCAKRETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVHDQQSWSYMDQIEKALKCQI 432          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAEL-NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF-EVDIKELP 455
            SE  K   L +L   L     +IFV+    A  L  K+  E +  S+ +H G+   +R      F+EG  ++L+ T+++ RGIDI  V++V+NYDMP          TYLHR+GR GRFG  G++I+F+      DIL  ++A F  V++  +P
Sbjct:  371 SEQHKFEVLCELYGLLTIGSSIIFVEKKETADVLYGKMKKEGHTVSV-LHGGLDNTDRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYGKPDPSTYLHRIGRTGRFGRVGVSISFIHDRRSYDILMAIKAYFGNVEMTRVP 523          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 3
Query:   15 LSELEKNRKLNDLLDALDF---NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 398
            +SE EK  +L   L+       ++V+IF  +     E+   L    +P++ IH    Q ER    + FK G   I+VATD+  RGID++ +N VIN+DMP + + Y+HR+GR GR G  G A++F +  ++
Sbjct:  323 ISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRIGRTGRGGATGTAVSFFTDGNN 453          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_NEOFI9.317e-1834.46ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_ASPFU9.317e-1834.46ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
PRP5_DEBHA9.317e-1840.00Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DRS1_CANGA9.317e-1841.32ATP-dependent RNA helicase DRS1 OS=Candida glabrat... [more]
DRS1_CANAL9.317e-1836.02ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DDX59_RAT9.317e-1837.01Probable ATP-dependent RNA helicase DDX59 OS=Rattu... [more]
DBP8_GIBZE9.317e-1835.71ATP-dependent RNA helicase DBP8 OS=Gibberella zeae... [more]
DBP5_USTMA9.317e-1831.97ATP-dependent RNA helicase DBP5 OS=Ustilago maydis... [more]
DBP5_CANAL9.317e-1835.71ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
DBP2_PICST9.317e-1835.88ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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