CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 449 Y+ L K+ L LL+ +IF ++ ++ LL F +I +H +SQ RL F+ ++ ILVATD+ RG+DI V++V+N+D+P + TY+HRVGR R G G+AI+FV+ D +I +++ +KE Sbjct: 271 YLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ-YDVEIWLRIEGALGKKLKE 417
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 51/148 (34.46%), Postives = 82/148 (55.41%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 449 Y+ L K+ L LL+ +IF ++ ++ LL F +I +H +SQ RL F+ ++ ILVATD+ RG+DI V++V+N+D+P + TY+HRVGR R G G+AI+FV+ D +I +++ +KE Sbjct: 271 YLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ-YDVEIWLRIEGALGKKLKE 417
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 52/130 (40.00%), Postives = 73/130 (56.15%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 425 LND D +++IFV+ A EL L+ +P + IH G Q +R + F N IL+AT + RG+D++ +N+VINY+ + Y+HRVGR GR G KG AITFVSS I + V+A Sbjct: 565 LNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAIHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKA 694
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 3 Query: 42 LNDLLDALDFN---QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395 L +L+ LD N ++V+FV A +L +L +H ++QE+RL FK +L+ TDL RG+DI ++ +VINYDMP S + YLHRVGR R G +G +ITFV AS Sbjct: 442 LFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSITFVGEAS 562
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 3 Query: 15 LSELEKNRKLNDLLDALDF-------NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD------SDILNQVQARFEVDIKELPE 458 L + + RK + L AL + ++VV+FV A L +L +H ++QE+RL K FK +L+ TDL RG+DI ++ +VINYDMP + + YLHRVGR R G G +ITFV +S S I+N VD K+ E Sbjct: 348 LQQFVRIRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERAIVKSAIVNGKGVAKTVDWKQAEE 508
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX59_RAT (Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 30 KNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVE--CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 K +KL ++L D F V+ A+L V+ S IHS SQ ER KG EG+ ++V+T ++GRG+D+ V +V+N+DMP S D Y+H+VGR GR G G AITF+++ S + V R + LP Q+ S Y+ Sbjct: 399 KKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLSSTSIHSEKSQVERREILKGLLEGDYEVVVSTGILGRGLDLVNVKLVVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNS-KRLFWDVAKRVKPTGSILPPQLLNSPYL 551
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLL--DALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461 YIK+ K L+ L +A V++F S A L+ LL +HS + Q +R+ F+ RILVATD+ RG+DI V++VINYD+P D Y+HRVGR R G KG A++FV D ++ ++ R D++ E+ Sbjct: 348 YIKVPVTHKEHYLHTFLLTEANVDKTVILFCNRTSTADYLHHLLRMLEHRVTSLHSKLPQRQRIDNLARFRASAARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTARAGRKGEAVSFVGQ-RDVELALTIEKRVGRDMEAWEEE 500
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_USTMA (ATP-dependent RNA helicase DBP5 OS=Ustilago maydis GN=DBP5 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 443 E K L +L + L Q +IF A + + + + +H + +R F++G ++L++T+++ RGIDI++V +VINYDMP A+TYLHR+GR GRFG KG++I FV ++Q++ + I Sbjct: 286 EDHKYEVLVELYNLLTIGQSIIFCAKRETADRIAQKMTQEGHKVDSLHGRLETADRDRTIDAFRDGKSKVLISTNVIARGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVHDQQSWSYMDQIEKALKCQI 432
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 3 Query: 18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAEL-NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF-EVDIKELP 455 SE K L +L L +IFV+ A L K+ E + S+ +H G+ +R F+EG ++L+ T+++ RGIDI V++V+NYDMP TYLHR+GR GRFG G++I+F+ DIL ++A F V++ +P Sbjct: 371 SEQHKFEVLCELYGLLTIGSSIIFVEKKETADVLYGKMKKEGHTVSV-LHGGLDNTDRDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDMPTDKYGKPDPSTYLHRIGRTGRFGRVGVSISFIHDRRSYDILMAIKAYFGNVEMTRVP 523
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18 Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 3 Query: 15 LSELEKNRKLNDLLDALDF---NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 398 +SE EK +L L+ ++V+IF + E+ L +P++ IH Q ER + FK G I+VATD+ RGID++ +N VIN+DMP + + Y+HR+GR GR G G A++F + ++ Sbjct: 323 ISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGKSPIMVATDVAARGIDVKGINFVINFDMPGNIEDYVHRIGRTGRGGATGTAVSFFTDGNN 453 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |