CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFNQ-------VVIFVKSASRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 458 E+ +KL+ L L F++ ++IF EL L F + IH SQE R F+EG +IL+ATD+ RGIDI V++V+NY M D Y+HR+GR GR G KG + TF+ DS++ ++ K+ PE Sbjct: 413 EILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDD-GDSEVFLDLKKFLNKGKKKCPE 565
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 3 Query: 12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 K+ +E + K + LLD L + +IFV++ A L++ L+ FP+ IH +Q ER + F+ G ILVAT + RG+DI V VINYD+P D Y+HR+GR GR G G+A F Sbjct: 423 KVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 549
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3 Query: 30 KNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVE--CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 K +KL ++L D F V+ A+L V+ S IHS SQ ER KG EG+ ++V+T ++GRG+D+ V +V+N+DMP S D Y+H+VGR GR G G AITF+++ S + V R + LP Q+ S Y+ Sbjct: 429 KKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNS-KRLFWDVAKRVKPTGSILPPQLLNSPYL 581
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461 +Y+ + K+ L +L+ L N +IF + + LL F +I +H MSQ +RL FK + IL+ATD+ RG+DI V++V+N+D+P + Y+HRVGR R G G AITFV+ D ++ +++ + P Q Sbjct: 241 YYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPVFPTQ 392
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 3 Query: 18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407 SE +K L L+ ++IFV + +L EC +HSG SQE+R +GFK+ +L+AT + RGI ++ V VIN+D+P + + Y HR+GR GR G+ GLA +F+ +D D+ Sbjct: 664 SENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFI---TDKDV 790
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQ--VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 467 Y+ + K L +L + + V+FV A L ++L + F +HS M Q ER FK G RIL+ATD+ RG+DI V +V+N+D+P D ++HRVGR R G KG AI+ + D + + ++ R + EL E +D Sbjct: 233 YVFVPSYVKEAYLTSILKLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGE-KDIERIESIEERINKKM-ELLEGVD 386
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 410 Y+K + L L D+L +IF + A L + L + F +HS M Q ER FK G +IL+ATD+ RG+DI V +V+NYD+P AD ++HRVGR R G KG AI+ V+ IL Sbjct: 236 YVKEAYLHSILNLPQYSDSLS----IIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRIL 366
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQ--VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 473 Y+ + E K L +L + ++ ++FV A L ++L++ +HS M Q ER + F+ R+L+ATD+ RG+DI V +V+NYD+P + DTY+HR GR R G G A++F+ + D + ++ R + E + DT+ Sbjct: 235 YLLVPEHVKEAYLYQVLSSEEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFI-APKDVSRIQAIEERIGKKMDEFTKVGDTA 391
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17 Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 3 Query: 18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 467 +E +K L L + VIFV++ A E+ K + +H + R F+ G ++L+ T+++ RGID+ V++VINYD+P A+TYLHR+GR GRFG G++I+FV + L+Q+ + +D+ +L P +D Sbjct: 297 TEKDKYDILCKLYGLMTIGSSVIFVRTRETANEIQKRMEADGHKVSALHGAYEGQSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREPDAETYLHRIGRTGRFGRVGVSISFVHDRRSFEALSQIAQFYGIDLIQLNPNDLD 455
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMP 485 +Y+ + K+ L L + ++IF ++ + LL +I +H G+SQ RL F+ G++ ILVATD+ RG+DI V+ V+N D+P + TY+HRVGR R G G AI+FV+ D ++ +++A + E E+ D + P Sbjct: 283 NYVFIPHTHKDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQ-YDLELWLRIEAALGTKLTEYSLEKDDVMVFRP 443 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |