CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 54/154 (35.06%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFNQ-------VVIFVKSASRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 458
            E+   +KL+ L   L F++       ++IF        EL   L    F  +  IH   SQE R      F+EG  +IL+ATD+  RGIDI  V++V+NY M    D Y+HR+GR GR G KG + TF+    DS++   ++       K+ PE
Sbjct:  413 EILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQEARERAIDSFREGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGNKGTSCTFIDD-GDSEVFLDLKKFLNKGKKKCPE 565          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 3
Query:   12 KLSELEKNRKLNDLLDALDFNQV----VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            K+  +E + K + LLD L  +      +IFV++   A  L++ L+   FP+  IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F
Sbjct:  423 KVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAF 549          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   30 KNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVE--CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            K +KL ++L D   F   V+        A+L    V+      S  IHS  SQ ER    KG  EG+  ++V+T ++GRG+D+  V +V+N+DMP S D Y+H+VGR GR G  G AITF+++ S   +   V  R +     LP Q+  S Y+
Sbjct:  429 KKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIHSEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNS-KRLFWDVAKRVKPTGSILPPQLLNSPYL 581          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461
            +Y+ +    K+  L  +L+ L  N  +IF  + +       LL    F +I +H  MSQ +RL     FK   + IL+ATD+  RG+DI  V++V+N+D+P  +  Y+HRVGR  R G  G AITFV+   D ++  +++      +   P Q
Sbjct:  241 YYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ-YDVELFQRIEHLIGKKLPVFPTQ 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 3
Query:   18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 407
            SE +K   L  L+       ++IFV        +  +L EC      +HSG SQE+R    +GFK+    +L+AT +  RGI ++ V  VIN+D+P + + Y HR+GR GR G+ GLA +F+   +D D+
Sbjct:  664 SENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFI---TDKDV 790          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 53/156 (33.97%), Postives = 80/156 (51.28%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQ--VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 467
            Y+ +    K   L  +L    + +   V+FV     A  L ++L +  F    +HS M Q ER      FK G  RIL+ATD+  RG+DI  V +V+N+D+P   D ++HRVGR  R G KG AI+ +    D + +  ++ R    + EL E +D
Sbjct:  233 YVFVPSYVKEAYLTSILKLPKYEESTAVVFVNRTMTAEVLRRMLRKLEFKVASLHSEMPQTERTNSLHRFKAGAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRKGDAISIIGE-KDIERIESIEERINKKM-ELLEGVD 386          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 410
            Y+K + L     L    D+L     +IF    + A  L + L +  F    +HS M Q ER      FK G  +IL+ATD+  RG+DI  V +V+NYD+P  AD ++HRVGR  R G KG AI+ V+      IL
Sbjct:  236 YVKEAYLHSILNLPQYSDSLS----IIFTNRTATAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRKGDAISIVAEKDVDRIL 366          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQ--VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTS 473
            Y+ + E  K   L  +L + ++     ++FV     A  L ++L++       +HS M Q ER    + F+    R+L+ATD+  RG+DI  V +V+NYD+P + DTY+HR GR  R G  G A++F+ +  D   +  ++ R    + E  +  DT+
Sbjct:  235 YLLVPEHVKEAYLYQVLSSEEYKSKSAIVFVNRTISAEILRRMLMQLEIRVTSLHSQMPQRERTNSLQRFRANAARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFI-APKDVSRIQAIEERIGKKMDEFTKVGDTA 391          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_NEUCR (ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 3
Query:   18 SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 467
            +E +K   L  L   +     VIFV++   A E+ K +         +H     + R      F+ G  ++L+ T+++ RGID+  V++VINYD+P          A+TYLHR+GR GRFG  G++I+FV      + L+Q+   + +D+ +L P  +D
Sbjct:  297 TEKDKYDILCKLYGLMTIGSSVIFVRTRETANEIQKRMEADGHKVSALHGAYEGQSRDVLLDEFRSGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREPDAETYLHRIGRTGRFGRVGVSISFVHDRRSFEALSQIAQFYGIDLIQLNPNDLD 455          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMP 485
            +Y+ +    K+  L  L +      ++IF ++      +  LL      +I +H G+SQ  RL     F+ G++ ILVATD+  RG+DI  V+ V+N D+P  + TY+HRVGR  R G  G AI+FV+   D ++  +++A     + E   E+ D   + P
Sbjct:  283 NYVFIPHTHKDTYLIYLCNEFAGQTIIIFTRTVIETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRSGHAISFVTQ-YDLELWLRIEAALGTKLTEYSLEKDDVMVFRP 443          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_DEBHA1.589e-1735.06Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DED1_EMENI1.589e-1739.37ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DDX59_MOUSE1.589e-1737.01Probable ATP-dependent RNA helicase DDX59 OS=Mus m... [more]
DDX47_MOUSE1.589e-1733.33Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]
DDX23_DICDI1.589e-1736.15ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
DBP8_LODEL1.589e-1733.97ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]
DBP8_DEBHA1.589e-1738.52ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
DBP8_ASHGO1.589e-1731.01ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii... [more]
DBP5_NEUCR1.589e-1731.45ATP-dependent RNA helicase dbp-5 OS=Neurospora cra... [more]
RRP3_CHAGB2.076e-1732.10ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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