CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 46/150 (30.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFNQ-VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV-QARFEVDIKELPEQI 464
            E ++ ++L ++L++  F   +++FV        + + +    + ++ +H   +QE+R       + G   ILVATDL GRGID+  V++V+N++M  + ++Y HR+GR GR G  G+AITF+    D+D+L  + Q   +  I ++P+++
Sbjct:  549 EDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFL-GPEDNDVLYDLRQIISKSSISKVPDEL 697          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   15 LSELEKNRKLNDLLDALDFNQV-VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS---DSDILN-QVQARFEVDIKELPEQIDTSTY 479
            + EL+K   L DLL+A   + + ++FV++   A  L   L +  +    IH   SQ++R      F+ G K ILVAT +  RG+DI  V  VIN+D+P   + Y+HR+GR GR G  GLA +F +  +     D+L+  V+A+     +E+P  +++  Y
Sbjct:  421 VEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAK-----QEVPSWLESMAY 575          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 413
            +IFV     A  L ++L+  +  +  +HS M Q+ER+     F+    R+LVATD+  RG+DI  V +VIN+D+P  AD Y+HRVGR  R G KG +++ V+    + + N
Sbjct:  253 IIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVTRVTN 363          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 428
            V+IF    S A  L+ LL   +     +HS + Q +R+     F+    RILVATD+  RG+DI  V IVINYD+P   D Y+HRVGR  R G KG A+TFV    D D++  ++ R
Sbjct:  453 VIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQ-RDVDLVLAIEQR 568          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSAD-------TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            +IFV++   A EL + +V        +   +  ++R      F+ G  ++L+ T+++ RGID+E V +VINYD+P  AD       TYLHR+GR GRFG  G+A+TFV   +    L+ + + F+ D+      IDTS +
Sbjct:  307 IIFVRTRRTAEELERRMVAEGHKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDIASYFKTDL----HPIDTSDW 442          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 3
Query:   72 NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPEQID 467
            N+V+IF  +   A ++ + L +  +P++ IH   +Q+ER      F+ G   I+VATD+  RGID++ +  V NYD P + + Y+HR+GR GR G KG A T+ +S       N  QAR  V I  E  + ID
Sbjct:  370 NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD------NAKQARELVSILSEAKQDID 496          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            H    ++ +K  KL   L+ +  +  +V+IFV +   A +L K L    +P++ IH    Q ER      FK G   I++ATD+  RG+D+  +  VINYD P++ + Y+HR+GR GR G KG + T+ +  +       VQ   E      PE  + + Y
Sbjct:  332 HVEVCTDFDKRSKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAMY 492          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461
            Y+ +    K+  L  LL+    +  ++F ++ +    L  LL    F ++ +H  +SQ  RL     FK   + ILVATD+  RG+DI  V++V+N+D+P  ++TY+HRVGR  R G  G A++FV+   D +I  +++       K++PE+
Sbjct:  335 YMLIPHKYKDLYLIHLLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQ-YDLEIFQRIEHALG---KQVPEE 482          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 3
Query:   30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTS 473
            KN  L  LL+       ++F ++ + A  ++ L     F +  +H  ++Q +R      FK G K ILVATD+  RG+DI  V++VINYD+P  + +Y+HRVGR  R G  G +++ VS   D +++ +++   EV  K+LP E +D S
Sbjct:  294 KNTFLIYLLNEFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ-YDLELILRIE---EVLGKKLPKENVDKS 438          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 45/123 (36.59%), Postives = 73/123 (59.35%), Query Frame = 3
Query:   15 LSELEKNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            +SE EK  +L+ LL D +D ++++IF ++     ++ + L    +P++ IH   +Q ER      FK G   I+ ATD+  RG+D++ +  VIN+D P + + Y+HR+GR GR G  G A TF
Sbjct:  477 ISEHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTF 599          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_NEUCR2.076e-1730.67Pre-mRNA-splicing ATP-dependent RNA helicase prp-2... [more]
DDX3Y_MOUSE2.076e-1734.38ATP-dependent RNA helicase DDX3Y OS=Mus musculus G... [more]
DBP8_YARLI2.076e-1738.74ATP-dependent RNA helicase DBP8 OS=Yarrowia lipoly... [more]
DBP8_NEUCR2.076e-1742.74ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]
DBP5_PHANO2.076e-1735.00ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria n... [more]
DBP2_SCHPO2.076e-1737.59ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
DBP2_CRYNE2.076e-1732.30ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
RRP3_PHANO2.711e-1732.89ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RRP3_ASHGO2.711e-1735.57ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
RH30_ORYSJ2.711e-1736.59DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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