CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 46/150 (30.67%), Postives = 88/150 (58.67%), Query Frame = 3 Query: 21 ELEKNRKLNDLLDALDFNQ-VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV-QARFEVDIKELPEQI 464 E ++ ++L ++L++ F +++FV + + + + ++ +H +QE+R + G ILVATDL GRGID+ V++V+N++M + ++Y HR+GR GR G G+AITF+ D+D+L + Q + I ++P+++ Sbjct: 549 EDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFL-GPEDNDVLYDLRQIISKSSISKVPDEL 697
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX3Y_MOUSE (ATP-dependent RNA helicase DDX3Y OS=Mus musculus GN=Ddx3y PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 15 LSELEKNRKLNDLLDALDFNQV-VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS---DSDILN-QVQARFEVDIKELPEQIDTSTY 479 + EL+K L DLL+A + + ++FV++ A L L + + IH SQ++R F+ G K ILVAT + RG+DI V VIN+D+P + Y+HR+GR GR G GLA +F + + D+L+ V+A+ +E+P +++ Y Sbjct: 421 VEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAK-----QEVPSWLESMAY 575
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_YARLI (ATP-dependent RNA helicase DBP8 OS=Yarrowia lipolytica GN=DBP8 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 3 Query: 81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 413 +IFV A L ++L+ + + +HS M Q+ER+ F+ R+LVATD+ RG+DI V +VIN+D+P AD Y+HRVGR R G KG +++ V+ + + N Sbjct: 253 IIFVNRTQTAETLRRMLMALDVKTASLHSEMRQQERVNALGRFRAQAARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSLVTERDVTRVTN 363
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 50/117 (42.74%), Postives = 67/117 (57.26%), Query Frame = 3 Query: 78 VVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 428 V+IF S A L+ LL + +HS + Q +R+ F+ RILVATD+ RG+DI V IVINYD+P D Y+HRVGR R G KG A+TFV D D++ ++ R Sbjct: 453 VIIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQ-RDVDLVLAIEQR 568
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 49/140 (35.00%), Postives = 78/140 (55.71%), Query Frame = 3 Query: 81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSAD-------TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 +IFV++ A EL + +V + + ++R F+ G ++L+ T+++ RGID+E V +VINYD+P AD TYLHR+GR GRFG G+A+TFV + L+ + + F+ D+ IDTS + Sbjct: 307 IIFVRTRRTAEELERRMVAEGHKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDIASYFKTDL----HPIDTSDW 442
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 3 Query: 72 NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI-KELPEQID 467 N+V+IF + A ++ + L + +P++ IH +Q+ER F+ G I+VATD+ RGID++ + V NYD P + + Y+HR+GR GR G KG A T+ +S N QAR V I E + ID Sbjct: 370 NKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD------NAKQARELVSILSEAKQDID 496
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17 Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 H ++ +K KL L+ + + +V+IFV + A +L K L +P++ IH Q ER FK G I++ATD+ RG+D+ + VINYD P++ + Y+HR+GR GR G KG + T+ + + VQ E PE + + Y Sbjct: 332 HVEVCTDFDKRSKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAARELVQILRESKADIPPELEEMAMY 492
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17 Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 461 Y+ + K+ L LL+ + ++F ++ + L LL F ++ +H +SQ RL FK + ILVATD+ RG+DI V++V+N+D+P ++TY+HRVGR R G G A++FV+ D +I +++ K++PE+ Sbjct: 335 YMLIPHKYKDLYLIHLLNDNIGHATILFTRTVNETQRLAVLLRTLGFQALPLHGQLSQSNRLGALNKFKAKARDILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQ-YDLEIFQRIEHALG---KQVPEE 482
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17 Identity = 53/149 (35.57%), Postives = 85/149 (57.05%), Query Frame = 3 Query: 30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTS 473 KN L LL+ ++F ++ + A ++ L F + +H ++Q +R FK G K ILVATD+ RG+DI V++VINYD+P + +Y+HRVGR R G G +++ VS D +++ +++ EV K+LP E +D S Sbjct: 294 KNTFLIYLLNEFIGKTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQ-YDLELILRIE---EVLGKKLPKENVDKS 438
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH30_ORYSJ (DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp. japonica GN=Os01g0911100 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17 Identity = 45/123 (36.59%), Postives = 73/123 (59.35%), Query Frame = 3 Query: 15 LSELEKNRKLNDLL-DALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380 +SE EK +L+ LL D +D ++++IF ++ ++ + L +P++ IH +Q ER FK G I+ ATD+ RG+D++ + VIN+D P + + Y+HR+GR GR G G A TF Sbjct: 477 ISEHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKVTRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTF 599 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |