CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFN-----------QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395
            E  + RK + L  AL FN           ++V+FV     A  L  ++         +H  ++QE+RL     FK     +L+ TDL  RG+DI ++ +VINYDMP S + YLHRVGR  R G +G ++TFV  +S
Sbjct:  452 EFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESS 587          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   21 ELEKNRKLNDLLDALDFN-----------QVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 395
            E  + RK + L  AL FN           ++V+FV     A  L  ++         +H  ++QE+RL     FK     +L+ TDL  RG+DI ++ +VINYDMP S + YLHRVGR  R G +G ++TFV  +S
Sbjct:  454 EFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESS 589          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DRS1_USTMA (ATP-dependent RNA helicase DRS1 OS=Ustilago maydis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 45/107 (42.06%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   72 NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 392
            +Q +IFV+S   A +L  +       +  +H  +SQE+R+     F++G    L+ATDL  RG+DI+ V  VINYDMP   + YLHRVGR  R G  G A+T V  A
Sbjct:  612 SQTMIFVRSKKLAHQLKIVFGLLGLSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLVGEA 718          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/153 (30.72%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   30 KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL-PEQID 467
            K + L ++   +   Q +IF ++   A  L   +++       +   ++ E+R +  + F++G +++L+ T++  RGID+++V IV+N+D+P         +TYLHR+GR GRFG KGLA   +       +L ++Q  F  +IK+L PE +D
Sbjct:  326 KYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI-EVDKLPLLMKIQDHFNSNIKQLDPEDMD 477          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 3
Query:   15 LSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386
            +S+  KN  L  LL+      ++IF ++ +     + L     F ++ +H  ++Q +RL     FK G   IL+ATD+  RG+DI  V++VINYD+P  +  Y+HRVGR  R G  G +I+ V+
Sbjct:  292 VSDGYKNTYLIHLLNEFVGKSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVT 415          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   81 VIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386
            ++F ++ + A  ++ LL   +F +I +H  +SQ  RL     FK  ++ ILVATD+  RG+DI  V++VIN+DMP  + TY+HRVGR  R G  G AI+ ++
Sbjct:  354 IVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGALNKFKARSRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTARAGRSGRAISIIT 455          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   51 LLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 386
            LL+       +IF ++      ++ LL    F +I +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G+AI+FV+
Sbjct:  287 LLNEFVGQSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVT 398          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   15 LSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            L+ +EK+ +L  +L + +    +I   S  R  +     +   F +  IH   SQ ER      F+ G   +LVATD+  RG+D++ + +V+NYD P+  + Y+HR+GR GR G  GLA TF
Sbjct:  387 LAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTF 508          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 3
Query:   27 EKNRKLNDLLDALDF-NQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 380
            EK R+L  +L + D  ++V+IF  +     +L + L    F +  IH   SQ ER      F+ G   ILVATD+  RG+DI+ + +VINYD P   + Y+HR+GR GR G  G+A TF
Sbjct:  380 EKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTR-QFGASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTF 497          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 53/157 (33.76%), Postives = 81/157 (51.59%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALD-FNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS-----ASD-SDILNQVQARFEVDIKEL 452
            H   ++ +EK R+L  +L + +  ++V+IF  +     +L + L    F +  IH   SQ ER      F+ G   +LVATD+  RG+D++ +  V+NYD P+  + Y+HR+GR GR G  G A TF        ASD   IL     R    I+E+
Sbjct:  380 HIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR-QFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DRS1_YEAST7.887e-1736.76ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS77.887e-1736.76ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_USTMA7.887e-1742.06ATP-dependent RNA helicase DRS1 OS=Ustilago maydis... [more]
DDX25_MOUSE7.887e-1730.72ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
RRP3_PICST1.030e-1635.48ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
RRP3_MAGGR1.030e-1641.18ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
RRP3_ASPCL1.030e-1638.39ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
RH46_ARATH1.030e-1635.25DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH40_ORYSJ1.030e-1640.34DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
RH14_ARATH1.030e-1633.76DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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