CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28 Identity = 64/156 (41.03%), Postives = 97/156 (62.18%), Query Frame = 3 Query: 6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470 Y+ + E E K L DL D++ Q VIF + + EL L F I+S + Q+ER T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++ D + +++ + I+ELP I T Sbjct: 238 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIAT 392
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28 Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +I + E K L DL + + Q VIF + + L L N C+HS MS++ER F+ G+ R+LV TDLV RGID+ VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+ D ++L ++++ + I+ELP +D + Y+ Sbjct: 247 FIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIEELP--VDFAAYL 402
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.931e-28 Identity = 66/159 (41.51%), Postives = 93/159 (58.49%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 Y + E +K LN L L NQ +IF S +R L K + E F H+ M Q ER + F++G R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI + + +D L +++ +I +P QID S Y+ Sbjct: 252 YAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELNTEIAPIPSQIDKSLYV 409
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27 Identity = 62/160 (38.75%), Postives = 98/160 (61.25%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 ++I + E K L DL + + Q VIF + + L + L + N C+HS M +++R F+ G+ R+LV TDLV RGID+ VNIVIN+D+P + ++YLHR+GR GR+G KG+AI FV+ D ++L ++++ + I ELP +D + Y+ Sbjct: 246 YFIAVEEEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQ-KDVEVLREIESHYHTQIDELP--VDFAAYL 402
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27 Identity = 56/141 (39.72%), Postives = 93/141 (65.96%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL + ++ Q VIF + + L + + E F C+H M Q ER T + F+ G+ R+L+ TD++ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+ +D+ L ++++ + I+E+PE I Sbjct: 259 LCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTE-NDARQLKEIESYYTTQIEEMPESI 398
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27 Identity = 64/159 (40.25%), Postives = 92/159 (57.86%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 Y + E +K LN L L NQ +IF S +R L K + E + H+ M Q+ R + F++G+ R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI F+ + N ++ +IK +P ID S Y+ Sbjct: 245 YAFVEEKQKLHCLNTLFSKLKINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINFIHWDDRKSLFN-IETELGTEIKPIPSDIDRSLYV 402
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27 Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 3 Query: 3 HYIKL-SELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 +YI + SE K L+DL D++ Q VIF + + EL K L + +F I+S + Q +R T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P++ + Y+HR+GR GRFG KG+AI V+ D + +++ + I+ELP I Sbjct: 238 YYINVESEEYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGD-MRELERFYSTQIEELPANI 391
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27 Identity = 67/158 (42.41%), Postives = 91/158 (57.59%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 Y + E +K LN L L NQ +IF S +R L K + E + IH+ M Q+ R + F+ G R LV TDL RGIDI+ VN+VIN+D P SA+TYLHRVGR+GRFG GLA+ + + D L +++ +IK +P QID + Y Sbjct: 340 YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKPIPPQIDRAIY 496
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27 Identity = 66/160 (41.25%), Postives = 95/160 (59.38%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +Y + E +K LN L L NQ +IF S +R L K + E + H+ M Q R + F+ G R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG +GLAI+F+S A D L +++ +I+ +P ID S Y+ Sbjct: 259 YYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWA-DRFNLYRIENELGTEIQPIPPSIDPSLYV 417
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27 Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +Y + E +K LN L L NQ +IF S +R L K + + + H+ M Q+ER + F++G R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI + + +D L +++ +I +P QID S Y+ Sbjct: 244 YYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPAQIDKSLYV 402 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |