CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 60/141 (42.55%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D++   Q VIF  + S+   L   L   NF    IH+ + Q ER T  K F+ G+ RIL+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFTVSAIHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTE-RDVGMMREIEQFYSTQIEEMPADI 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 60/151 (39.74%), Postives = 94/151 (62.25%), Query Frame = 3
Query:    6 YIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 455
            YI + + E K   L DL + +   Q VIF  +  +   L + L +  F    +H  M QEER    K F+ G+ R+L+ TDL+ RGID+++V++VINYD+P S + Y+HR+GR GRFG KG+AI FVS+  D ++L +++  +   ++E+P
Sbjct:  245 YINVEKEEWKLETLCDLYETVTITQAVIFCSTRRKVDWLTQQLHDRQFTVSAMHGDMKQEEREVIMKEFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSSKENYIHRIGRGGRFGRKGVAINFVSN-EDKNMLEEIETYYNTQVEEMP 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   27 EKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            EK + L +L   + FNQ ++F    +RA  L  +L     P++CI  G+SQ++RL      K+   R+L++TDL  RGID E+VN+VIN D+P   +TY+HR+GRAGRFGT G+A+T+     + + +  +  +  +D+  LP+ I
Sbjct:  262 EKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEEENKMMAIAQKCSLDLMHLPDPI 407          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  311 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYV 469          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  312 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  312 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  312 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: CGH1_CAEEL (ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis elegans GN=cgh-1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.437e-27
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S  R   L K + E  +    IHS M+Q  R   +  F++GN R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  G+AI  + +  D   L +++      I+ +P+ +D   Y+
Sbjct:  258 YYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLI-TYEDRHTLRRIEQELRTRIEPIPKTVDPKLYV 416          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 66/158 (41.77%), Postives = 91/158 (57.59%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK +P QID + Y
Sbjct:  350 YAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKPIPPQIDQAIY 506          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH12_ORYSJ (DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 65/159 (40.88%), Postives = 92/159 (57.86%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P +++TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK +P QID + Y
Sbjct:  362 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKTIPPQIDLAVY 519          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICST4.929e-2742.55ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_CRYNE4.929e-2739.74ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
DDX20_DANRE4.929e-2739.04Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
DDX6_XENTR6.437e-2741.25Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_MOUSE6.437e-2741.25Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN6.437e-2741.25Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK6.437e-2741.25Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
CGH1_CAEEL6.437e-2739.38ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis... [more]
RH8_ORYSJ8.407e-2741.77DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sat... [more]
RH12_ORYSJ8.407e-2740.88DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
back to top