CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q  R   +  F++G  R+LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + S +D   L +++     +IK +P  ID S Y+
Sbjct:  246 YAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYNLYKIEQELGTEIKPIPATIDKSLYV 403          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 59/141 (41.84%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D++   Q VIF  + S+   L   L E +F    IH+ + Q ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  253 LCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-RDVGMMREIEKFYSTQIEEMPADI 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I+ +P  ID S Y+
Sbjct:  249 YYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIQAIPATIDKSLYV 407          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX20_MOUSE (Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus GN=Ddx20 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26
Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 3
Query:   27 EKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            EK + L +L   + FNQ ++F    SRA  L  +L    FP+ CI   M+Q +RL      K+ + R+L++TDL  RGID E+VN+V+N D+P   +TY+HR+GRAGRFGT GL +T+     + +++ ++  +  +++  LP+ I
Sbjct:  296 EKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 441          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 65/158 (41.14%), Postives = 91/158 (57.59%), Query Frame = 3
Query:    6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG  GLA+  + +  D   L +++     +IK++P  ID + Y
Sbjct:  347 YAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 503          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  256 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 395          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  257 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID + Y+
Sbjct:  311 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKNLYV 469          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  ++E +K   LN L   L  NQ +IF  S+ R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  301 YYAYVTERQKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 459          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX20_HUMAN (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 56/146 (38.36%), Postives = 89/146 (60.96%), Query Frame = 3
Query:   27 EKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            EK + L +L   + FNQ ++F    SRA  L  +L    FP+ CI   M+Q +RL      K  + R+L++TDL  RGID E+VN+V+N D+P   +TY+HR+GRAGRFGT GL +T+     + +++ ++  +  +++  LP+ I
Sbjct:  295 EKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI 440          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_DEBHA8.407e-2740.88ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
IF4A_CANAL1.098e-2641.84ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
DHH1_VANPO1.098e-2639.38ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DDX20_MOUSE1.098e-2638.36Probable ATP-dependent RNA helicase DDX20 OS=Mus m... [more]
RH8_ARATH1.434e-2641.14DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
FAL1_NEUCR1.434e-2641.13ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_MAGGR1.434e-2641.13ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
DDX6_XENLA1.434e-2640.63ATP-dependent RNA helicase ddx6 OS=Xenopus laevis ... [more]
DDX6_CAVPO1.434e-2641.25Probable ATP-dependent RNA helicase DDX6 (Fragment... [more]
DDX20_HUMAN1.434e-2638.36Probable ATP-dependent RNA helicase DDX20 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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