CX308748
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27 Identity = 65/159 (40.88%), Postives = 93/159 (58.49%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 Y + E +K LN L L NQ +IF S +R L K + E + H+ M Q R + F++G R+LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI + S +D L +++ +IK +P ID S Y+ Sbjct: 246 YAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQHARNKVFHEFRQGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYNLYKIEQELGTEIKPIPATIDKSLYV 403
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26 Identity = 59/141 (41.84%), Postives = 91/141 (64.54%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D++ Q VIF + S+ L L E +F IH+ + Q ER T K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+ D ++ +++ + I+E+P I Sbjct: 253 LCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-RDVGMMREIEKFYSTQIEEMPADI 392
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26 Identity = 63/160 (39.38%), Postives = 95/160 (59.38%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +Y + E +K LN L L NQ +IF S +R L K + + + H+ M Q+ER + F++G R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG GLAI + + +D L +++ +I+ +P ID S Y+ Sbjct: 249 YYAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIQAIPATIDKSLYV 407
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX20_MOUSE (Probable ATP-dependent RNA helicase DDX20 OS=Mus musculus GN=Ddx20 PE=1 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26 Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 3 Query: 27 EKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 EK + L +L + FNQ ++F SRA L +L FP+ CI M+Q +RL K+ + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGRFGT GL +T+ + +++ ++ + +++ LP+ I Sbjct: 296 EKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 441
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 65/158 (41.14%), Postives = 91/158 (57.59%), Query Frame = 3 Query: 6 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 479 Y + E +K LN L L NQ +IF S +R L K + E + IH+ M Q+ R + F+ G R LV TDL RGIDI+ VN+VIN+D P +A+TYLHRVGR+GRFG GLA+ + + D L +++ +IK++P ID + Y Sbjct: 347 YAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLI-TYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 503
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D L Q VIF + + L + E NF +H M Q+ER + + F++GN R+L++TD+ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S D IL ++ + I E+P + Sbjct: 256 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 395
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3 Query: 42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 L DL D L Q VIF + + L + E NF +H M Q+ER + + F++GN R+L++TD+ RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S D IL ++ + I E+P + Sbjct: 257 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +Y ++E +K LN L L NQ +IF S+ R L K + + + IH+ M QE R + F+ G R LV TDL RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI + + D L ++ + +IK +P ID + Y+ Sbjct: 311 YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKNLYV 469
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 66/160 (41.25%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482 +Y ++E +K LN L L NQ +IF S+ R L K + + + IH+ M QE R + F+ G R LV TDL RGIDI+ VN+VIN+D P A+TYLHR+GR+GRFG GLAI + + D L ++ + +IK +P ID S Y+ Sbjct: 301 YYAYVTERQKVHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 459
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DDX20_HUMAN (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 56/146 (38.36%), Postives = 89/146 (60.96%), Query Frame = 3 Query: 27 EKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464 EK + L +L + FNQ ++F SRA L +L FP+ CI M+Q +RL K + R+L++TDL RGID E+VN+V+N D+P +TY+HR+GRAGRFGT GL +T+ + +++ ++ + +++ LP+ I Sbjct: 295 EKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI 440 The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bpback to top |