CX308748

Overview
NameCX308748
Unique NameCX308748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  261 YYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 482
            +Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P  ID S Y+
Sbjct:  261 YYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 59/141 (41.84%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D++   Q VIF  + S+   L   L E  F    IH+ + Q ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I E+P  I
Sbjct:  253 LVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQKFTVSAIHADLPQGERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-KDVGMMREIEKFYSTQITEMPADI 392          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 56/138 (40.58%), Postives = 87/138 (63.04%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 455
            L D+ D+L   Q VIF  +  +  +L + + + NF    +H  M Q+ER    K F+ G  R+L+ TD++ RGID+++V++VINYD+P   + Y+HR+GR+GRFG KG+AI FV + SD  IL  ++  +   I E+P
Sbjct:  262 LCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKN-SDIRILRDIEQFYSTQIDEMP 398          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 55/143 (38.46%), Postives = 91/143 (63.64%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 470
            L DL D+L   Q VIF  +  +   L+  L + NF  + +H  M QE+R      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++S SD   + +++  + + I  +P  + T
Sbjct:  256 LCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITS-SDLSKMKEIEKYYRIKISPVPADLST 397          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 57/156 (36.54%), Postives = 97/156 (62.18%), Query Frame = 3
Query:    3 HYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 467
            +Y+ + + E K   L DL D+L   Q VIF  +  +   L++ L + NF    +H  M QEER      F+ G  R+L++TD+  RGID++++++VINYD+PD+ + Y+HR+GR+GRFG KG+AI F++   +   L ++++ + + IK  P  ++
Sbjct:  241 YYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITK-EERPKLKEIESHYRIKIKPTPANLE 395          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CX308748 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   42 LNDLLDALDFNQVVIFVKSASRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 464
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  255 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
The following BLAST results are available for this feature:
BLAST of CX308748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_COCIM1.873e-2641.13ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
DHH1_YEAST1.873e-2639.38ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS71.873e-2639.38ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
IF4A_LODEL2.446e-2641.84ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_DICDI2.446e-2640.58Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_VANPO2.446e-2638.46ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
FAL1_NEOFI2.446e-2641.13ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
FAL1_KLULA2.446e-2636.54ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_EMENI2.446e-2641.13ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
FAL1_ASPTN2.446e-2641.13ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]

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Properties
Property NameValue
Genbank descriptionC21003D05Rv AbsLeaSub1 Citrus clementina cDNA clone C21003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308748 ID=CX308748; Name=CX308748; organism=Citrus clementina; type=EST; length=702bp
AGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGTTGAATGAT
CTCCTTGATGCATTGGACTTTAATCAAGTTGTTATCTTTGTCAAAAGTGC
TAGCCGAGCAGCGGAGTTAAACAAGTTACTTGTAGAATGCAATTTTCCTT
CTATATGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTAC
AAAGGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGT
TGGTAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACA
TGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGG
TTTGGCACCAAGGGCCTTGCAATTACTTTTGTATCATCTGCTTCAGACTC
CGATATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGC
TTCCTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCT
GTTCTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAG
GCCCTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATAT
GTTGCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGC
TGCCTTTTCTTGTTTTTGGGATTTGTAGCCTTTTATACCTTCTGGGTACC
CT
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