CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ +F
Sbjct:   58 FKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            FK  ++F  DYP  PPT RF+++M+HPNIY +G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ +F
Sbjct:   58 FKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMF 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.883e-14
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++
Sbjct:   54 FPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK
Sbjct:   51 FKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNK 136          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LT IQ L+ +PNP+ P  ++ +  F  NK
Sbjct:   51 FKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNK 136          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILT-SIQSLLCDPNPNSPANSEAARLFSENKR 251
            ++L ++  ++YP K P++ FV+++FHPNI  A GSICLD++ + WSP+YD+  I+   I  LL +PN + P N+EAA L   +K+
Sbjct:   49 WRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKK 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = -1
Query:   21 FKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 251
            F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N ++  L
Sbjct:   54 FQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNL 131          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UB2R2_MOUSE1.883e-1441.76Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN1.883e-1441.76Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2G2_PONAB1.883e-1438.95Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE1.883e-1438.95Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN1.883e-1438.95Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN1.883e-1438.95Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2T_HUMAN2.460e-1441.86Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2T_BOVIN2.460e-1440.70Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBC8_YEAST2.460e-1443.53Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC21_ARATH2.460e-1442.31Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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