CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11755 contig Ccv1_Contig11755:335..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.543e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.543e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.543e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.543e-21
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.346e-20
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++
Sbjct:   50 FFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.346e-20
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  +YP KPP V F +R++HPN+ ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E A+++  ++
Sbjct:   50 FFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+L+S  +
Sbjct:   84 YRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP V F +R++HPNI ++ SICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDR 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K
Sbjct:   50 FFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDK 131          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K
Sbjct:   50 FFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDK 131          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UB2D2_PIG3.543e-2153.66Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D2_MOUSE3.543e-2153.66Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN3.543e-2153.66Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN3.543e-2153.66Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
U2D2B_RAT1.346e-2050.00Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE1.346e-2050.00Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC20_ARATH2.297e-2054.88Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UB2D3_BOVIN2.297e-2052.44Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UB2D1_MOUSE2.297e-2051.22Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.297e-2051.22Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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