CX308756

Overview
NameCX308756
Unique NameCX308756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11755 contig Ccv1_Contig11755:335..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + + +
Sbjct:   54 FNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 34/82 (41.46%), Postives = 61/82 (74.39%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            F + ++   DYP +PP + F ++++HPN+ +  G+ICLDIL++QWSP+Y + + L S+QSLLC P P++P +++ A+++ +N
Sbjct:   53 FVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQN 134          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.012e-16
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICL------------DILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   + F ++YPN PPTVRF S M+HPN+Y DG +C+            ++   +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E +
Sbjct:   57 FNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQ 150          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.628e-16
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   + F E+YP  PPTV F S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + +N+
Sbjct:   55 FNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNR 149          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.432e-16
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            + +T+++  +YP+KPP V+F +  +HPN+Y  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R FS NK
Sbjct:   58 YPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNK 141          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.432e-16
Identity = 36/83 (43.37%), Postives = 55/83 (66.27%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F+L L   +DYP + P VRF+++++HPNI   G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +N++
Sbjct:   52 FELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQ 134          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.432e-16
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F   + F ++YPN PPTVRF S ++HPN+Y DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + E +
Sbjct:   54 FYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKR 148          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.482e-16
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -1
Query:    3 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKR 251
            F L L  T+DYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N++
Sbjct:   52 FNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEK 134          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.854e-16
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            FKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133          
BLAST of CX308756 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.854e-16
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = -1
Query:    9 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 251
            FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA++  EN
Sbjct:   53 FKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQREN 146          
The following BLAST results are available for this feature:
BLAST of CX308756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBC7_ARATH1.180e-1641.05Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC1_SCHPO1.180e-1641.46Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC7_WHEAT2.012e-1640.43Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC14_ARATH2.628e-1641.05Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC9_YEAST3.432e-1644.05SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC13_YEAST3.432e-1643.37Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_ARATH3.432e-1641.05Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2N_DICDI4.482e-1644.58Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_MACFA5.854e-1643.90Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC7_CAEEL5.854e-1641.49Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC21003E02Rv AbsLeaSub1 Citrus clementina cDNA clone C21003E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308756 ID=CX308756; Name=CX308756; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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