CX308783

Overview
NameCX308783
Unique NameCX308783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length217
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:2..218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.945e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            E+IN +LALV+KSGKYTLGYK+ ++SLR  K KLII++ N P LRKSE+
Sbjct:    8 ENINQKLALVIKSGKYTLGYKSTIKSLRQGKAKLIIIAANTPVLRKSEL 56          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.540e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ESIN +LALV+KSGK+TLGYK+ ++SLR  K KLII++ N P LRKSE+
Sbjct:    8 ESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSEL 56          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.317e-11
Identity = 34/49 (69.39%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            ESIN+RL LVMKSGKY LG K  L+ LR  K KLII++NN P LRKSEI
Sbjct:    9 ESINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEI 57          
BLAST of CX308783 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.390e-11
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   70 ESINNRLALVMKSGKYTLGYKTVLRSLRASKGKLIILSNNCPPLRKSEI 216
            E+IN +LALV+KSGKY+LGYK+ ++SLR  K KLII++ N P LRKSE+
Sbjct:    8 ENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSEL 56          
The following BLAST results are available for this feature:
BLAST of CX308783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_ASHGO1.945e-1165.3160S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30_CANGA2.540e-1165.3160S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_BRABE3.317e-1169.3960S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30_KLULA7.390e-1163.2760S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21003G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308783 ID=CX308783; Name=CX308783; organism=Citrus clementina; type=EST; length=217bp
GCGGGGTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGGCCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTG
back to top