CX308789
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_ECOLI (Transcriptional regulatory protein zraR OS=Escherichia coli (strain K12) GN=zraR PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13 Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = -2 Query: 307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630 +LVVDDDI+ IL+ +LR YNV + AL +RE+ FD+VL DV M +MDG L+ I L +PV++M+A V + ++ GA DYLIKP+ + L+ Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: CITT_BACHD (Transcriptional regulatory protein citT OS=Bacillus halodurans GN=citT PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13 Identity = 43/122 (35.25%), Postives = 71/122 (58.20%), Query Frame = -2 Query: 277 RVLVVDDDITVXRILEQMLRRCLYN--VTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 633 +VL+++DD V +I EQM+ Y ++TC AL+ L E+ D++L DV++PD+ G +LL I + D+ ++M++A V V +R G DYL+KP+++E L V+KR Sbjct: 6 KVLIIEDDFRVAQIQEQMVNDHPYFHVISTCRTGGEALDYLSEKAAALDLILLDVYIPDVKGLELLWAIREKFRDVDIMMVTAAKEVDTVQEALRGGIIDYLLKPVQKEVLHQRLDAYVQKR 127
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_PORAE (Probable transcriptional regulator ycf27 OS=Porphyridium aerugineum GN=ycf27 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.693e-13 Identity = 43/132 (32.58%), Postives = 78/132 (59.09%), Query Frame = -2 Query: 244 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK--RWNENKEHENSG 633 ++LV+DD+ ++ RILE L Y+V + + AL+I + ++V+ D+ MP +DG+ + + + E D+P+IM++A VS + G+ GA DY++KP +EL+ + V+R+ + + N NSG Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHP--NLVVLDLMMPKLDGYGVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDKASSNNNLPNSG 134
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_KLEOX (Transcriptional regulatory protein zraR OS=Klebsiella oxytoca GN=zraR PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12 Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = -2 Query: 307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630 +LVVDDDI+ IL+ +LR Y V + AL +RE+ FD+VL D+ M +MDG + L+ I +PV++M+A V + ++ GA DYLIKP+ ++L+ Sbjct: 8 ILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREK--VFDLVLCDIRMAEMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQ 114
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_SALTY (Transcriptional regulatory protein zraR OS=Salmonella typhimurium GN=zraR PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12 Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -2 Query: 307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630 +LVVDDD++ IL+ +LR YNV AL +RE+ FD+VL DV M +MDG L+ I L +P+++M+A V + ++ GA DYLIKP+ + L+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREK--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: ZRAR_SALTI (Transcriptional regulatory protein zraR OS=Salmonella typhi GN=zraR PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12 Identity = 43/109 (39.45%), Postives = 64/109 (58.72%), Query Frame = -2 Query: 307 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELK 630 +LVVDDD++ IL+ +LR YNV AL +RE+ FD+VL DV M +MDG L+ I L +P+++M+A V + ++ GA DYLIKP+ + L+ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREK--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQ 114
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_CYACA (Probable transcriptional regulator ycf27 OS=Cyanidium caldarium GN=ycf27 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12 Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = -2 Query: 265 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNEN 630 +L+VDD+ + +IL+ L Y+V+T AL I D+++ DV MP +DG+ + + I E D+P+IM++A V + G+ GA DY+IKP EL+ Q ++R+ N Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHS--IDLIILDVMMPKLDGYGVCQEIRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQTRN 133
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: APRR2_ARATH (Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 3.973e-12 Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = -2 Query: 268 DQFPAGLRVLVV------DDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE 654 + FP GL+VL++ D D + L Y VTT + AL+ + + F + + +V+M + + FK LE + LP IM+S D ++ M+ I GA ++L KP+ E+LKNIWQHVV K +N+ Sbjct: 12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFHIAIVEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPEKLKNIWQHVVHKAFND 145
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: NTRC_AZOC5 (Nitrogen assimilation regulatory protein ntrC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ntrC PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12 Identity = 44/111 (39.64%), Postives = 59/111 (53.15%), Query Frame = -2 Query: 301 VLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 630 +LV DDD + +L Q L R Y V +C AA + + G D+V++DV MPD + F LL I DLPVI+MSA +R GA +YL KP +EL +I Sbjct: 6 ILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDG--DLVITDVVMPDENAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISI 114
BLAST of CX308789 vs. ExPASy Swiss-Prot
Match: YCF27_GALSU (Probable transcriptional regulator ycf27 OS=Galdieria sulphuraria GN=ycf27 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12 Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = -2 Query: 280 RVLVVDDDITVXRILEQMLRRCLYNVTTCSQAAVALNILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 633 ++L+ DD+ ++ RILE L Y V T AL + + ++V+ DV MP +DG+ + + I E D+P+IM++A G V+ + G+ GA DY++KP +EL+ + V+R+ Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHP--NLVVLDVMMPKIDGYGVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124 The following BLAST results are available for this feature:
BLAST of CX308789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 44
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308789 ID=CX308789; Name=CX308789; organism=Citrus clementina; type=EST; length=655bpback to top |