CX308794
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.799e-20 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P ++ +L L+T L H LP Y EW + RG L T+DRDYG +N + H+I THV HHLF +PHYH +EAT+A KP+ G+YY+ Sbjct: 312 LYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.349e-20 Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P + +L +T L H LP Y EW + RG L T+DRDYG++N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 304 LYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20 Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P ++ +L +T L H LP Y EW + RG L T+DRDYGI N + H+I THV HHLF +PHYH ++ATKA K +LG YY+ Sbjct: 242 VYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.068e-20 Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P L +L L+T L H LP Y EW + RG L T+DRDYG +N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 308 LYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P + +L +T L H LP Y EW + RG L T+DRDYG +N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 297 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.835e-20 Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P ++ +L +T L H LP Y EW + RG L T+DRDYGI N + H+I THV HHLF +PHYH ++AT+A K +LG YY+ Sbjct: 239 VYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19 Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = -3 Query: 98 FLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 340 +L +T L H LP Y EW + RG L T+DRDYG++N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 273 WLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354
BLAST of CX308794 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19 Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = -3 Query: 98 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 373 +YG P + +L +T L H LP Y W + RG L T+DRDYG +N + H+I THV HHLF +PHYH +EAT+A KP++G+YY+ Sbjct: 318 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410 The following BLAST results are available for this feature:
BLAST of CX308794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308794 ID=CX308794; Name=CX308794; organism=Citrus clementina; type=EST; length=381bpback to top |