CX308826

Overview
NameCX308826
Unique NameCX308826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length347
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308826_ssr126 microsatellite CX308826_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:322..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308826 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = -1 
Query:  198 GAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 347
            GA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   58 GAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107
[Close]
BLAST of CX308826 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = -1 
Query:  198 VRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 332
            VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:  149 VRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
The following BLAST results are available for this feature:
BLAST of CX308826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE2.995e-1264.00Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
HEVL_ARATH8.713e-1264.44Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionC21004C07Rv AbsLeaSub1 Citrus clementina cDNA clone C21004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308826 ID=CX308826; Name=CX308826; organism=Citrus clementina; type=EST; length=347bp
TTTTTTTTTTTTTTTTTTTTTTTAGAAAAAGGAAACTTTTATTACACTAA
CTGTAGTGCCCATGAGCACTTCTTGATACTTCATCAGAAGTTTTATTTTA
TTTATGAACTAAGTATATAGAGGGATAATTAATTAATAAATTAACCCTAT
TACAGCATTAAGCTTCGATCGATCATGGAATTATAGATGGTGCTTTAATC
ATTGCAGTTCACAAACTCGTAGCTGACAGTAAGGAAGCCTTGTTGATAGC
CTATTCCATTGGTGTCCAATTTCTTGAACACTCCTTCGTCCAAATCTAAG
CCTCCATTGGCACACTGATCAACAATTCTCACAATTTGTTGGGCTCC
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