CX308827

Overview
NameCX308827
Unique NameCX308827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig959 contig Ccv1_Contig959:1..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: ENPL_HORVU (Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 46/135 (34.07%), Postives = 69/135 (51.11%), Query Frame = -1
Query:   24 DKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTW------------QEKSRTIEVXXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 392
            DKQYVWE++AD S + I E+T  E L  RGT+I L+L+++ K E+ E  +++ LVK YS+F++FPIY W            +E+S   E                              +WEL N+ K +W+R+P
Sbjct:  219 DKQYVWESKADGS-FAISEDTWNEPL-GRGTEIKLHLRDEAK-EYLEEGKLKDLVKKYSEFINFPIYLWATKEVDVEVPADEEESNEEEESTTETTEEEETEDDEEKKPKTKTVKETTTEWELLNDMKAVWLRSP 350          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.756e-13
Identity = 53/147 (36.05%), Postives = 72/147 (48.98%), Query Frame = -1
Query:   24 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV-------------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 425
            KVVV +K+   D  Y WE+ A   S+V+R   DPE  L RGT+IT+Y+KED + +F E  +I+ +VK +SQF+ +PI    EK R  EV                                       KY++ E  N+TKPIW RNP
Sbjct:  135 KVVVTSKN-NDDDSYQWESSA-GGSFVVRPYNDPE--LTRGTKITMYIKED-QVDFLEERKIKEIVKKHSQFIGYPIKLVVEKEREKEVEDEEAVESKDEEKKEGDVENVGEDADAEKDKKKTKKIKEKYFEDEELNKTKPIWTRNP 276          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12
Identity = 55/152 (36.18%), Postives = 71/152 (46.71%), Query Frame = -1
Query:   24 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV------------------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 425
            KVVVA+K    D  Y WE+ A   S++IR+  DPE  L RGT+ITLY+KED   ++ E  RI+ +VK +SQF+ +PI    EK R  EV                                            KY + E  N+TKPIW RNP
Sbjct:  137 KVVVASKH-NDDDCYQWESSA-GGSFIIRQVNDPE--LTRGTKITLYIKEDQT-DYLEERRIKEIVKKHSQFIGYPIKLTVEKERDKEVSDDEAEEEKKDEDKEKKEGEIEDVGEDEEEDKKDKDKKKKKIKEKYHEDEELNKTKPIWTRNP 283          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: ENPL_CATRO (Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.434e-12
Identity = 44/141 (31.21%), Postives = 67/141 (47.52%), Query Frame = -1
Query:   24 DKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV------------------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 392
            DKQY+WE++AD + + I E+   E L  RGT+I L+L+ D+  E+ +  +++ LVK YS+F++FPIY W  K   +EV                                              ++WEL N+ K IW+RNP
Sbjct:  219 DKQYIWESKADGA-FAISEDVWNEPL-GRGTEIRLHLR-DEAQEYLDEFKLKELVKRYSEFINFPIYLWASKEVEVEVPAEEDDSSDDEDNKSESSSSEEGEEEETEKEEDEKKPKTKKVKETTYEWELLNDMKAIWLRNP 356          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.423e-12
Identity = 50/143 (34.97%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   24 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV---------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 425
            KVVV +K+   D  Y WE+ A   S+V+R   DPE  + RGT+I +++KED + +F E  +I+ +VK +SQF+ +PI    EK R  EV                                   KY++ E  N+TKPIW RNP
Sbjct:  135 KVVVTSKN-NDDDSYQWESSA-GGSFVVRPFNDPE--VTRGTKIVMHIKED-QIDFLEERKIKEIVKKHSQFIGYPIKLVVEKEREKEVEDEEAVEAKDEEKKEGEVENVADDADKKKTKKIKEKYFEDEELNKTKPIWTRNP 272          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.251e-12
Identity = 53/159 (33.33%), Postives = 71/159 (44.65%), Query Frame = -1
Query:   24 QKVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 428
            +KVVV TK    D+QY WE+ A   S+ +R  TD  + + RGT++ LYLKED   E+ E  R++ +VK +SQF+ +PI  + EK R  EV                                                  KY D E  N+TKPIW RNP
Sbjct:  141 EKVVVITKH-NDDEQYAWESSA-GGSFTVR--TDHGEPIGRGTKVILYLKEDQT-EYLEERRVKEVVKKHSQFIGYPITLYVEKEREKEVSDDEAEEEKVEKEEEESKDEEKPKIEDVGSDEEEEEGEKSKKKKTKKIKEKYIDQEELNKTKPIWTRNP 294          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.061e-11
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = -1
Query:   24 VVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE----VXXXXXXXXXXXXXXXXXXXXXXXXXXKYWDWELANETKPIWMRNP 422
            V+V +K+   D+QYVWE+ A     +  + T+P   L RGT+I L++KED + ++ + T+I+ LVK +S+F+ +PI     K + ++                               +  +W++ N+TKP+W RNP
Sbjct:  138 VIVHSKN-NDDEQYVWESSAGGEFTIALDHTEP---LGRGTKIVLHMKED-QLDYLDETKIKNLVKKHSEFIQYPISLLTIKEKEVDEETTAKEGEEESTDAKIEEIEEEKEKKKVKVQEKEWDVLNKTKPLWTRNP 269          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP90_THEAN (Heat shock protein 90 OS=Theileria annulata GN=TA12105 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.591e-11
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  159 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV 425
            KV V +K+  +D QYVWE+ A     V R+  D  + LKRGT++ L+LKED   E+ E  R++ LVK +S+F+SFPI    EK++  EV
Sbjct:  140 KVTVVSKN-NADDQYVWESSASGHFTVKRD--DSHEPLKRGTRLILHLKEDQT-EYLEERRLKELVKKHSEFISFPISLSVEKTQETEV 224          
BLAST of CX308827 vs. ExPASy Swiss-Prot
Match: HSP90_THEPA (Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.996e-11
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  159 KVVVATKSPRSDKQYVWEAEADSSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEV 425
            KV V +K+  +D QYVWE+ A S  + ++++ D  + LKRGT++ L+LKED   E+ E  R++ LVK +S+F+SFPI    EK++  EV
Sbjct:  140 KVTVVSKN-NADDQYVWESTA-SGHFTVKKD-DSHEPLKRGTRLILHLKEDQT-EYLEERRLKELVKKHSEFISFPISLSVEKTQETEV 224          
The following BLAST results are available for this feature:
BLAST of CX308827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ENPL_HORVU2.202e-1334.07Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1[more]
HSP90_CAEBR3.756e-1336.05Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP90_BRUPA1.093e-1236.18Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
ENPL_CATRO2.434e-1231.21Endoplasmin homolog OS=Catharanthus roseus GN=HSP9... [more]
HSP90_CAEEL5.423e-1234.97Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HS90B_CHICK9.251e-1233.33Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]
HSC90_DICDI2.061e-1129.20Heat shock cognate 90 kDa protein OS=Dictyostelium... [more]
HSP90_THEAN4.591e-1144.94Heat shock protein 90 OS=Theileria annulata GN=TA1... [more]
HSP90_THEPA5.996e-1143.82Heat shock protein 90 OS=Theileria parva GN=TP02_0... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21004C08Rv AbsLeaSub1 Citrus clementina cDNA clone C21004C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308827 ID=CX308827; Name=CX308827; organism=Citrus clementina; type=EST; length=428bp
TTTTTTTTTTTTTTTTTTTTTTTTGGGTTCCGCATCCATATAGGTTTTGT
TTCATTGGCCAGTTCCCAGTCCCAATACTTCTCAGTTTTAGTTGTTTTCT
TCGTTTTCTTTTCACCCTCCGGCTGTTCTTCCCCTTCTTCTGGTTTTTCC
TCCTCTTCCACCTCAATGGTCCTTGACTTTTCTTGCCAGGTATAGATGGG
GAAAGAAACAAACTGGGAGTAATTCTTCACCAAACCCTGGATTCTTGTTG
GTTCTGAAAATTCGTATTTGTCATCCTCCTTTAAATAAAGTGTGATTTGT
GTTCCACGCTTTAGGAGCTTCTCAGGATCAGTTTCTTCCCTGATCACATA
AGAGCTGCTGTCAGCTTCTGCTTCCCAAACATATTGCTTATCTGACCGTG
GGCTCTTTGTAGCCACTACAACCTTCTG
back to top