CX308836

Overview
NameCX308836
Unique NameCX308836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9548 contig Ccv1_Contig9548:465..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.605e-14
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 3
Query:   42 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVFTPKD 293
            K + +FVLFFDCS E    R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++   EVF  VK +    D
Sbjct:  111 KADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADVKNILEKDD 196          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.320e-14
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 3
Query:    6 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            NE+N   +      K +  FVLFFDC  E    R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K   EVF+ V  +F
Sbjct:   97 NEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKVVQIF 192          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.745e-13
Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    6 NEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKAVF 281
            NEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A +   EV++ V+ +F
Sbjct:   95 NEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.745e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   48 EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFDAVKA 275
            E + VLFFD +EE + +R+L+R Q  GR DDN +TI+KR   F+ S+ PVV YYE+KGK+ +I+A     ++F  V A
Sbjct:  124 EAKLVLFFDVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAEGSVDDIFAVVVA 201          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   51 PEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVFD-AVKAV 278
            P  +L+ D   E M +R++ R Q  GR DDN ETI+KR  ++ +++ PV+ YYE +G VRKI++  P  EVF   VKA+
Sbjct:  112 PALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYYETRGIVRKINSELPVDEVFAIVVKAI 190          
BLAST of CX308836 vs. ExPASy Swiss-Prot
Match: UMPK_SCHPO (Probable uridylate kinase OS=Schizosaccharomyces pombe GN=SPCC1795.05c PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 32/78 (41.03%), Postives = 55/78 (70.51%), Query Frame = 3
Query:   54 EFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPAAEVF-DAVKAV 278
            +F L+F C +E M +R+++R +  GR DDN+E+I+KRF  + ++S+PVV+Y +++ ++  IDA +    VF D VKA+
Sbjct:  110 KFALYFRCGQETMLKRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVFEDTVKAL 187          
The following BLAST results are available for this feature:
BLAST of CX308836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KCY_DANRE5.605e-1444.19UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_CHICK7.320e-1441.67UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_DICDI4.745e-1341.67Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KAD1_CAEEL4.745e-1347.44Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
KAD1_CYPCA1.993e-1144.30Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
UMPK_SCHPO5.800e-1141.03Probable uridylate kinase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC21004D06Rv AbsLeaSub1 Citrus clementina cDNA clone C21004D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308836 ID=CX308836; Name=CX308836; organism=Citrus clementina; type=EST; length=380bp
GCGGGAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAG
CCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCG
CATTTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTA
GGAAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATAT
TATGAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCAAAGCCTGCTGC
AGAGGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGG
CTGCTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATATCAAGGTG
GTGGTATTGTTGTTGGCTGCTGCCTATTGT
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