CX308867
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308867 vs. ExPASy Swiss-Prot
Match: RPN7_YEAST (26S proteasome regulatory subunit RPN7 OS=Saccharomyces cerevisiae GN=RPN7 PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13 Identity = 47/161 (29.19%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 19 QDVATYGGLCALASFDRAELKSKVIDNVNFRNFLEL---VPEVRVLINDFYSSRYASCLDYLGNLKANLLLDI-HLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTG 489 + +ATY + L + +R +LKSKVID+ + + + + L Y+S YAS YL AN+L+ +L+ H + ++R K Q + ++ L MA+AF SVA ++ +L I + Q+ ID N I+ D +NA + +++ G Sbjct: 247 ESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQG 407
BLAST of CX308867 vs. ExPASy Swiss-Prot
Match: PSMD6_ORYSJ (26S proteasome non-ATPase regulatory subunit 6 OS=Oryza sativa subsp. japonica GN=RPN7 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12 Identity = 43/152 (28.29%), Postives = 69/152 (45.39%), Query Frame = 1 Query: 34 YGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTG 489 Y L ++ S DR LK+KV+D + VP + +N Y+ +Y S L + LD +L H ++R Q+ + SV + MA+AF +V I+ EL I ++ +ID +L D RNA +Q ++ G Sbjct: 222 YTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQG 373
BLAST of CX308867 vs. ExPASy Swiss-Prot
Match: PSMD6_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12 Identity = 39/152 (25.66%), Postives = 67/152 (44.08%), Query Frame = 1 Query: 34 YGGLCALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTG 489 Y L ++ + DR LK KV+D L +P + +N Y +Y + + + D +L+ H ++R Q+ + SV + MA AF SV I++EL I ++ +ID +L D +NA +Q ++ G Sbjct: 220 YTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQG 371
BLAST of CX308867 vs. ExPASy Swiss-Prot
Match: PSMD6_DICDI (26S proteasome non-ATPase regulatory subunit 6 OS=Dictyostelium discoideum GN=psmD6 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11 Identity = 39/147 (26.53%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 49 ALASFDRAELKSKVIDNVNFRNFLELVPEVRVLINDFYSSRYASCLDYLGNLKANLLLDIHLHDHVETLYDQIRNKALIQYTHPFVSVDLHMMANAFKTSVAGIEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTG 489 +L DR LK KVID+ + + + P+++ L+ FY+ YA+ L + ++ D +L +H ++R A Q+ + SV L M+N F S I++EL + ++ +ID + ++ +D +N ++ LQ G Sbjct: 220 SLLHLDRVSLKQKVIDSPDVLSVINDTPKLQDLLQSFYNGDYANFFGALAHFSDSIKGDRYLAEHSRFFTREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDKVSGVIETTRSDAKNHLYKTTLQQG 366
BLAST of CX308867 vs. ExPASy Swiss-Prot
Match: CSN1_BRAOL (COP9 signalosome complex subunit 1 (Fragment) OS=Brassica oleracea GN=CSN1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.806e-11 Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 367 ELEAL-ITDNQIQARIDSHNKILYARHADQRNATFQR 474 ELEAL ITDNQIQARIDSHNKILYARHADQRNATFQ+ Sbjct: 1 ELEALLITDNQIQARIDSHNKILYARHADQRNATFQK 37 The following BLAST results are available for this feature:
BLAST of CX308867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308867 ID=CX308867; Name=CX308867; organism=Citrus clementina; type=EST; length=689bpback to top |