CX308872

Overview
NameCX308872
Unique NameCX308872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length308
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:8..315. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308872 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.270e-18
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = -3 
Query:    1 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNS 165
            + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNT 55
[Close]
BLAST of CX308872 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.213e-14
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = -3 
Query:   13 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLR 186
            TYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWTAFC   GP       RCLR
Sbjct:   35 TYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP-------RCLR 83
The following BLAST results are available for this feature:
BLAST of CX308872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE1.270e-1867.27Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
CHAL_BRARA7.213e-1458.62Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionC21004G11Rv AbsLeaSub1 Citrus clementina cDNA clone C21004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308872 ID=CX308872; Name=CX308872; organism=Citrus clementina; type=EST; length=308bp
ACTGTTTGTGACCCTTAAGCACCTGCCACAAGCAGCTTGTCCAATGGGTC
CGCCCGAATGACAGAAAGCAGTCCAGCCATATTTCTGGCGCCAGGCCAAG
GGCTTGTTGGCATCCCATGTTGCGCAGAAAGCGCTCGCTGCCGTCAAGTC
CCATCCAATTTGCTCAGGGTGGTAGAGATGATACGTGGCTCTCACATTAG
AAGCACTTTGGGCAGAAGCAGCTGCCACCAGTAGACAAACTGACAGAATC
ACACAGAGACCGAACCTCCCCATATTTTTCTCTTAATGTTCTAAGCTTAA
CTTCCCCG
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