CX308874

Overview
NameCX308874
Unique NameCX308874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308874_ssr343 microsatellite CX308874_ssr343:343..362. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig425 contig Ccv1_Contig425:1..365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A+  D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -3
Query:    1 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CN
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = -3
Query:    1 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+    D  A S +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK L+K+F CN
Sbjct:    8 SFDPFADTG--DDEASSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCN 65          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.540e-13
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = -3
Query:    1 AFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 180
            +FDPFA+    D    + +Y+HIR+QQRNGRK+LTTVQG+ +E+   +ILK LKK+F CN
Sbjct:    8 SFDPFADTG--DDETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACN 65          
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.675e-12
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = -3
Query:    1 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 174
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CN
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACN 66          
The following BLAST results are available for this feature:
BLAST of CX308874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
EIF1_MOUSE5.461e-1454.84Eukaryotic translation initiation factor 1 OS=Mus ... [more]
EIF1_HUMAN5.461e-1454.84Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN5.461e-1454.84Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG7.132e-1454.84Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE7.132e-1454.84Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA7.132e-1454.84Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN7.132e-1454.84Eukaryotic translation initiation factor 1b OS=Hom... [more]
SUI1_ASHGO2.075e-1356.67Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST3.540e-1355.00Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO6.675e-1256.90Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC21004H01Rv AbsLeaSub1 Citrus clementina cDNA clone C21004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308874 ID=CX308874; Name=CX308874; organism=Citrus clementina; type=EST; length=374bp
ATTACAGCAGAACTCTTTCTTGAGGTCCTTGAGAATCTTGTTGTAGCTGA
ATTCTTTCTTCAACCCTTGCACAGTTGTCAGGCTTTTCCTCCCATTACGT
TGCTGCACGCGAATATGCACATAATCTTTTGAACCAGCACCTGAGTCCTC
AGCATTTGCCTCAGCAAAGGGATCAAAGGCAGATGGAATCTGGGTGTCAA
ATTCAGACATGAAACTTGGTTGTTGGAGTGTCAAAGAGTCCGTAACCAGC
AAGAAATTGGCTTCAATTCACTTAAATTGCTCTTAGCTTAAGAGGAAGAT
TGCGAATCAAACTGCCTTACGAGAGCGGAAACAAGAGAAGCCAGAGAGAG
AGAGAGAGAGAGACAGAGATCCCG
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