CX308874

Overview
NameCX308874
Unique NameCX308874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_ANOGA (Protein translation factor SUI1 homolog OS=Anopheles gambiae GN=AGAP006459 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = -3 
Query:    1 SAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 183
            + FDPFA+A            VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CN
Sbjct:    7 NTFDPFADAIKGADYDVQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACN 67
[Close]
BLAST of CX308874 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = -3 
Query:    1 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 174
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CN
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACN 67
The following BLAST results are available for this feature:
BLAST of CX308874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SUI1_ANOGA2.537e-1154.10Protein translation factor SUI1 homolog OS=Anophel... [more]
SUI1_DROME3.313e-1155.17Protein translation factor SUI1 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionC21004H01Rv AbsLeaSub1 Citrus clementina cDNA clone C21004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308874 ID=CX308874; Name=CX308874; organism=Citrus clementina; type=EST; length=374bp
ATTACAGCAGAACTCTTTCTTGAGGTCCTTGAGAATCTTGTTGTAGCTGA
ATTCTTTCTTCAACCCTTGCACAGTTGTCAGGCTTTTCCTCCCATTACGT
TGCTGCACGCGAATATGCACATAATCTTTTGAACCAGCACCTGAGTCCTC
AGCATTTGCCTCAGCAAAGGGATCAAAGGCAGATGGAATCTGGGTGTCAA
ATTCAGACATGAAACTTGGTTGTTGGAGTGTCAAAGAGTCCGTAACCAGC
AAGAAATTGGCTTCAATTCACTTAAATTGCTCTTAGCTTAAGAGGAAGAT
TGCGAATCAAACTGCCTTACGAGAGCGGAAACAAGAGAAGCCAGAGAGAG
AGAGAGAGAGAGACAGAGATCCCG
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