CX308884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: RUXF_YEAST (Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae GN=SMX3 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.848e-17 Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = 3 Query: 36 PVNPKPFLNNLTGKTVIVKLKWGM-EYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGVP 254 PVNPKPFL L V VKLK+ EY+G L S D+Y NLQL AEE+V G G LGEI IRCNNVLY+R +P Sbjct: 12 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 85
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3 Query: 45 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 P FL + G+ V+VKL G++Y+G LA +D YMN+ L EEYV+GQ G+ IR NNVLY+ Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 73
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.790e-12 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 3 Query: 45 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 P FL + G+ V+VKL G++Y+G LA +D YMN+ L EEYV+GQ G+ IR NNVLY+ Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 73
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 12 PRPSMATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 P P AT +P FL + GK VIV+L G++Y+G L+ +D YMN+ L EE+V+G + G+ IR NNVLY+ Sbjct: 17 PPPPQATHTGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAFIRGNNVLYI 93
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_AJECN (U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12 Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 +P FL+ +TG V VKL G+ YKG L SVD YMN+ L EEYVDG+ + G+ +R NNVLY+ Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVRGNNVLYI 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_SCHPO (U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.988e-12 Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 +P FLN + GK V+++L G++YKG L+ +D YMNL L EEYV+G+ + G+ IR NNVLY+ Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYV 70
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_COCIM (U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis GN=LSM6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.516e-11 Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 +P FL+ +TG +V VKL G+ YKG L S+D YMN+ L +E+V+G+ + G++ +R NNVLY+ Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVRGNNVLYI 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_ASPFU (U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus fumigatus GN=lsm6 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 +P FL + G V VKL G+ YKG L SVD YMN+ L +EE+VDG+ + G+ IR NNVLY+ Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIRGNNVLYI 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_NEOFI (U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=lsm6 PE=3 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11 Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYL 242 +P FL + G V VKL G+ Y+G L SVD YMN+ L +EE+VDG+ + G+ IR NNVLY+ Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIRGNNVLYI 77
BLAST of CX308884 vs. ExPASy Swiss-Prot
Match: LSM6_MAGGR (U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe grisea GN=LSM6 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 3 Query: 42 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNLGEILIRCNNVLYLRGVP 254 +P FL + G V VKL G+ YKG L SVD YMN+ L AEE+V GQ + G+ +R NNV+Y+ P Sbjct: 13 DPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVMYIAASP 83 The following BLAST results are available for this feature:
BLAST of CX308884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308884 ID=CX308884; Name=CX308884; organism=Citrus clementina; type=EST; length=360bpback to top |