CX308892

Overview
NameCX308892
Unique NameCX308892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.702e-30
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = -3
Query:  367 KPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAQRRFLVLPSLVSGRIYVVDTQKNPRAPSLHKVVEPADI 630
            KPDYLATVD +P S ++ KVIHRLP+P + DELHHSGWN+CSSC+ D S +R  L+LPSL+S RIYVVD   +PRAP LHK VEP D+
Sbjct:   40 KPDYLATVDINPQSPNFCKVIHRLPMPNLKDELHHSGWNACSSCFDDPSKRRNRLILPSLISSRIYVVDVGTDPRAPRLHKTVEPTDL 127          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.678e-22
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CCNSGNCG T FSKFFKDRCPD YSYPKDD TSTFTCP GT+YKVVFCP
Sbjct:  177 CCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.102e-19
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CCNSG+CGPT +S+FFK RCPD YSYPKDD  STFTC  GTDY+VVFCP
Sbjct:  154 CCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.979e-18
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP*GI 156
            CC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP G+
Sbjct:  177 CCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCPNGV 229          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP*GI 156
            CC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP G+
Sbjct:  169 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCPNGV 221          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP*G 153
            CC  G CGPT FSKFFK RCPD YSYP+DD TSTFTCP G T+Y+V+FCP G
Sbjct:  177 CCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCPNG 228          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.303e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP*GI 156
            CC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y+VVFCP G+
Sbjct:  177 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCPNGV 229          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.223e-17
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYKVVFCP*GI 156
            CC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP G T+Y+VVFCP G+
Sbjct:  177 CCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCPNGV 229          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.468e-17
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +CGPT  S+FFK+RCPD YSYP+DD TS FTCP+GT+Y+VVFCP
Sbjct:  176 CCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.448e-17
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 CC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC    + NC PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  155 CCVGSAANNCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206          
The following BLAST results are available for this feature:
BLAST of CX308892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
SBP1_DANRE8.702e-3065.91Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
TLP_ACTDE6.678e-2287.76Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN3.102e-1977.55Protein P21 OS=Glycine max PE=1 SV=1[more]
OS81_SOLCO9.979e-1871.70Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
TPM1_SOLLC1.303e-1769.81Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OSMO_TOBAC1.303e-1773.08Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
OS13_SOLCO1.303e-1769.81Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
NP24_SOLLC2.223e-1771.70Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
PRR1_TOBAC6.468e-1768.63Pathogenesis-related protein R major form OS=Nicot... [more]
IAAT_MAIZE8.448e-1769.23Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC21005C04Rv AbsLeaSub1 Citrus clementina cDNA clone C21005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308892 ID=CX308892; Name=CX308892; organism=Citrus clementina; type=EST; length=632bp
TGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAA
GGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCA
CATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGA
GGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGACATAG
CCTTCTATATCTGTTATAATATTGGAATAAGGACCGTGTGGTCTTCACTG
CCATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACTATAA
TTTGTTCGTGAATTAAAAGGAGAATAACTGTNAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTACAATATCTGCAGGCTCAACAACTTTATGCAAAGAG
GGAGCCCTTGGATTTTTTTGTGTGTCAACCACGTATATACGACCAGATAC
CAAAGAAGGCAAGACAAGAAAACGCCGTTGAGCAGATGAATCTCCATAGC
ATGAGCTACATGAATTCCATCCCGAATGATGTAGTTCATCACCAATGTAT
GGCACAGGGAGCCGATGAATAACTTTTGAATAAGAAGAAGAGCTAGGATC
CGCATCCACTGTCGCTAGGTAATCAGGCTTCT
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