CX308892

Overview
NameCX308892
Unique NameCX308892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14477 contig Ccv1_Contig14477:205..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.210e-16
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 CC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC    + +C PT +S++FK +CPD YSYPKDDATSTFTCP GT+YKVVFCP
Sbjct:  176 CCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.476e-16
Identity = 36/52 (69.23%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPT-GTDYKVVFCP*G 153
            CC  G CGPT  S+FFK RCPD YSYP+DD TSTFTC +  TDYKV+FCP G
Sbjct:  178 CCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCQSWTTDYKVMFCPYG 229          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.593e-15
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +CGPT  S+FFK RCPD YSYP+DD  S FTCP GT+Y+VVFCP
Sbjct:  176 CCTNGPGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFCP 226          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.718e-15
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 CCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPT-GTDYKVVFCP*G 153
            CC  G CGPT  S++FK RCPD YSYP+DD TSTFTC +  TDYKV+FCP G
Sbjct:  178 CCTQGPCGPTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCPYG 229          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    1 CCNSG--NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +G  +C  T +S+FFK RCPD YSYP+DD TSTFTC T T+Y+VVFCP
Sbjct:  174 CCTNGQGSCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223          
BLAST of CX308892 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 CCNSG---NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYKVVFCP 147
            CC +    NC  T +SK FK++CP  YSY KDD T+TF C +GTDY +VFCP
Sbjct:  175 CCRNAYVDNCPATNYSKIFKNQCPQAYSYAKDD-TATFACASGTDYSIVFCP 225          
The following BLAST results are available for this feature:
BLAST of CX308892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ZEAM_MAIZE3.210e-1667.31Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
OS35_SOLCO5.476e-1669.23Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
PRR2_TOBAC1.593e-1566.67Pathogenesis-related protein R minor form OS=Nicot... [more]
OLPA_TOBAC2.718e-1567.31Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
OSL3_ARATH1.491e-1364.71Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
PRR3_JUNAS5.304e-1155.77Pathogenesis-related protein OS=Juniperus ashei PE... [more]

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Properties
Property NameValue
Genbank descriptionC21005C04Rv AbsLeaSub1 Citrus clementina cDNA clone C21005C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308892 ID=CX308892; Name=CX308892; organism=Citrus clementina; type=EST; length=632bp
TGTTGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAA
GGATAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCA
CATTTACTTGCCCGACTGGGACAGACTACAAGGTTGTATTCTGCCCCTGA
GGCATTTTTTTTCAGGGGTAGAAATGGAAATAGAAAACTATACGACATAG
CCTTCTATATCTGTTATAATATTGGAATAAGGACCGTGTGGTCTTCACTG
CCATAGAGCTGGAGCAGGCACATGTAGTTATGTGCGTGTATGAACTATAA
TTTGTTCGTGAATTAAAAGGAGAATAACTGTNAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGTACAATATCTGCAGGCTCAACAACTTTATGCAAAGAG
GGAGCCCTTGGATTTTTTTGTGTGTCAACCACGTATATACGACCAGATAC
CAAAGAAGGCAAGACAAGAAAACGCCGTTGAGCAGATGAATCTCCATAGC
ATGAGCTACATGAATTCCATCCCGAATGATGTAGTTCATCACCAATGTAT
GGCACAGGGAGCCGATGAATAACTTTTGAATAAGAAGAAGAGCTAGGATC
CGCATCCACTGTCGCTAGGTAATCAGGCTTCT
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