CX308905

Overview
NameCX308905
Unique NameCX308905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.140e-46
Identity = 88/120 (73.33%), Postives = 108/120 (90.00%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            F+EE+EALV+KSW +MKK++  LGL+FFL+IFEIAPSA+++F FLRDS+VPLE N KLKTHA+SVFVMTCE+A QLRKAGK+TVRE+TLK+LG  H KYGV + HFEVT+F+LLETIKEA
Sbjct:   10 FSEEKEALVLKSWAIMKKDSANLGLRFFLKIFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGVADGHFEVTRFALLETIKEA 129          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.149e-45
Identity = 85/120 (70.83%), Postives = 108/120 (90.00%), Query Frame = -2
Query:    4 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 363
            +F+EEQEALV+KSW ++KK++  + L+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV + HFEV KF+LL+TIKE
Sbjct:   13 SFSEEQEALVLKSWAILKKDSANIALRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGVGDAHFEVVKFALLDTIKE 132          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.914e-44
Identity = 83/120 (69.17%), Postives = 106/120 (88.33%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA++LFSFLR+S+VPLE+N KLK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV KF+LLETIKEA
Sbjct:   16 FTEEQEALVLKSWAIMKNDSAHIGHRFFLKIFEVAPSARQLFSFLRNSDVPLEKNPKLKIHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIKEA 135          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 79/119 (66.39%), Postives = 103/119 (86.55%), Query Frame = -2
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTEEQEALV+KSW +MK ++  +G +FFL+IFE+APSA+ LFSFLR+S+VPLE+N  LK HAM+VFVMTCE+A QLRK G+VTVR++T+K+LG+ HFK GV + HFEV +F+LLETIK+
Sbjct:   13 FTEEQEALVLKSWAIMKDDSANIGHRFFLKIFEVAPSARHLFSFLRNSDVPLEKNPNLKKHAMAVFVMTCEAAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIKD 131          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL2_ARATH (Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana GN=AHB2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.929e-32
Identity = 66/119 (55.46%), Postives = 90/119 (75.63%), Query Frame = -2
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ LFSFLRDS+     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG++H K GV++ HFEV K +LL T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKGLFSFLRDSDEVPHNNPKLKAHAVKVFKMTCETAIQLREEGKVVVADTTLQYLGSIHLKSGVIDPHFEVVKEALLRTLKE 124          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL2_BRANA (Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = -2
Query:    4 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 360
            FTE+QEALV +SW ++K++  +  L FF +I EIAP+A+ +FSFLRD++     N KLK HA+ VF MTCE+A+QLR+ GKV V ++TL+ LG+VHFK GV++ HFEV K +L+ T+KE
Sbjct:    6 FTEKQEALVKESWEILKQDIPKYSLHFFSQILEIAPAAKDMFSFLRDTDEVPHNNPKLKAHAVKVFKMTCETAIQLREKGKVVVADTTLQYLGSVHFKSGVLDPHFEVVKEALVRTLKE 124          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL2_SOLLC (Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-30
Identity = 66/120 (55.00%), Postives = 88/120 (73.33%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  SW  MK++  +L L+FF  I EIAP A+ +FSFL+DS+   E N KL+ HA+ VF MTCESA+QLR+ G+V V E+TLK LG++H +  V + HFEV K +LL T+KEA
Sbjct:    3 FTDKQEALVRDSWEFMKQDIPQLSLRFFSLILEIAPVAKNMFSFLKDSDELPENNPKLRAHAVKVFKMTCESAIQLREKGEVVVGETTLKYLGSIHLQKRVADPHFEVVKEALLRTVKEA 122          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL2_GOSHI (Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum GN=HB2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-30
Identity = 67/120 (55.83%), Postives = 86/120 (71.67%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QE LV +SW V+K++     L+FF  I EIAP A+ +FSFLR+S    + N KLK HA+ VF MTCESA+QLR+ G+V V ++TLK LG VH K GV + HFEV K +LL TI+EA
Sbjct:    3 FTEKQEGLVKESWEVLKQDIPHSSLRFFSLILEIAPGAKNMFSFLRESEEIPQNNPKLKAHAVKVFKMTCESAIQLREKGEVVVADTTLKYLGTVHVKSGVKDPHFEVVKEALLRTIEEA 122          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBL0_PHYPA (Non-symbiotic hemoglobin 0 OS=Physcomitrella patens GN=GLB0 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 55/120 (45.83%), Postives = 83/120 (69.17%), Query Frame = -2
Query:    7 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIK 366
            + +++E E LV +SW ++KK+A   G+ FF ++FEIAP A+ ++SFLRDS +P E+N K+K HA  VF+MT ++AVQL + G   V ES L+KL A H   GV ++ FE+ K ++L  I+
Sbjct:   22 KTYSKENEQLVKQSWEILKKDAQRNGINFFRKVFEIAPGAKAMYSFLRDSTIPFEENPKVKNHARYVFMMTGDAAVQLGEKGAYQVLESKLQKLAATHVNAGVTDDQFEIVKEAILYAIE 141          
BLAST of CX308905 vs. ExPASy Swiss-Prot
Match: HBPA_CASGL (Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            A TE QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G+     +TLK+LG++H K  + + HFEV K +LL TIKEA
Sbjct:    2 ALTERQEALLKQSWEVLKQNIPGHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGQAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKEA 122          
The following BLAST results are available for this feature:
BLAST of CX308905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBL_HORVU1.140e-4673.33Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]
HBL1_ORYSJ2.149e-4570.83Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL3_ORYSJ6.914e-4469.17Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL4_ORYSJ8.452e-4266.39Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]
HBL2_ARATH7.929e-3255.46Non-symbiotic hemoglobin 2 OS=Arabidopsis thaliana... [more]
HBL2_BRANA1.352e-3154.62Non-symbiotic hemoglobin 2 OS=Brassica napus GN=HB... [more]
HBL2_SOLLC1.495e-3055.00Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum... [more]
HBL2_GOSHI1.495e-3055.83Non-symbiotic hemoglobin 2 OS=Gossypium hirsutum G... [more]
HBL0_PHYPA2.918e-2645.83Non-symbiotic hemoglobin 0 OS=Physcomitrella paten... [more]
HBPA_CASGL1.892e-2548.76Hemoglobin A OS=Casuarina glauca GN=SYMA PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC21005D11Rv AbsLeaSub1 Citrus clementina cDNA clone C21005D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308905 ID=CX308905; Name=CX308905; organism=Citrus clementina; type=EST; length=466bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCATGGGTCTTGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGCT
GATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTATTTG
GACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCCGCGT
ACCTGCCCGGGCGGCC
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