CX308908
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57 Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3 Query: 147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 MPLRL+IKRKL RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W Sbjct: 1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3) HSP 1 Score: 218.779 bits (556), Expect = 1.359e-56 Identity = 95/132 (71.97%), Postives = 120/132 (90.91%), Query Frame = 3 Query: 147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 MPLRL+IKRKL S+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W Sbjct: 1 MPLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.503e-55 Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3 Query: 147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 MPLRL+IK+KL+ RS+RVKSVD+HP+EPWILASLY G V IWNY++Q M KS EV+ PVR+A+F+A+KQW+V G+DD +IRVYNYNTM+K+K FEAH DYIRC+ VHPTLPY+LSSSDDM IKLWD+EKGW Sbjct: 1 MPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGW 133
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_CAEEL (Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=2 SV=2) HSP 1 Score: 201.83 bits (512), Expect = 1.719e-51 Identity = 88/132 (66.67%), Postives = 112/132 (84.85%), Query Frame = 3 Query: 147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 MPLRL++KRKL RS+RVK VDLHP E W+LA+LY+G V IWNY++QT+ KS EV ++PVR+AKFV RK WVV G+DDM IRV+NYNT+++V FEAH+DY+R + VHPTLPYV+SSSDDML+K+WDW+ W Sbjct: 1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKW 132
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 2.482e-50 Identity = 88/132 (66.67%), Postives = 112/132 (84.85%), Query Frame = 3 Query: 147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 MPL+L+IKR+L RS+RVK VDLHP+EPW+L +LY+G V I NY++Q M K EV ++PVRSA+FVARK W++ G+DDM IRV+NYNT++KV FEAH+DY+RC+AVHPT P VL+SSDDMLIKLW+WEK W Sbjct: 1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMW 132
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_YEAST (Coatomer subunit beta' OS=Saccharomyces cerevisiae GN=SEC27 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.841e-45 Identity = 76/130 (58.46%), Postives = 102/130 (78.46%), Query Frame = 3 Query: 153 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 ++L+IK+ + RS+RVK +D HP+EPW+L +LYSG V +WNY++Q +S +VTE PVR+ KF+ARK W++ G+DD IRV+NYNT +KV FEAH DYIR +AVHPT PYVLS SDD+ +KLW+WE W Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_SCHPO (Probable coatomer subunit beta' OS=Schizosaccharomyces pombe GN=sec27 PE=2 SV=2) HSP 1 Score: 170.244 bits (430), Expect = 5.543e-42 Identity = 71/130 (54.62%), Postives = 100/130 (76.92%), Query Frame = 3 Query: 153 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542 +RL+ +RKL +ERVK+VD HP+EPW++AS Y+G V IWNY +QT+ +S ++ ++P+R+ F+ARK W V G+DD +RVYNYNT +KV FEAH DYIR + VHPT P++L+SSDDM IK ++W+ W Sbjct: 2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAFIARKNWFVCGSDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMTIKCFNWDMSW 131
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22 Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K ++ RVK + HP+ PWILASL+SG++ +++Y+ +T+ + + E PVR F + V+G DD I+V+NY + + H DYIR V H P+++SSSDDM+I++W+W+ Sbjct: 4 KFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWILASL+SG + +W+Y+ T+ + + PVR F A + V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWILASL+SG + +W+Y+ T+ + + PVR F A + V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWNWQ 123 The following BLAST results are available for this feature:
BLAST of CX308908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308908 ID=CX308908; Name=CX308908; organism=Citrus clementina; type=EST; length=545bpback to top |