CX308908

Overview
NameCX308908
Unique NameCX308908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 2.738e-57
Identity = 96/132 (72.73%), Postives = 121/132 (91.67%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_RAT (Coatomer subunit beta' OS=Rattus norvegicus GN=Copb2 PE=1 SV=3)

HSP 1 Score: 218.779 bits (556), Expect = 1.359e-56
Identity = 95/132 (71.97%), Postives = 120/132 (90.91%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IKRKL   S+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+ EV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW+K W
Sbjct:    1 MPLRLDIKRKLTAMSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.503e-55
Identity = 96/133 (72.18%), Postives = 117/133 (87.97%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVT-ELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL+IK+KL+ RS+RVKSVD+HP+EPWILASLY G V IWNY++Q M KS EV+   PVR+A+F+A+KQW+V G+DD +IRVYNYNTM+K+K FEAH DYIRC+ VHPTLPY+LSSSDDM IKLWD+EKGW
Sbjct:    1 MPLRLDIKKKLSTRSDRVKSVDIHPTEPWILASLYDGNVYIWNYETQNMVKSFEVSPNNPVRTARFIAKKQWIVTGSDDTYIRVYNYNTMEKIKSFEAHADYIRCIIVHPTLPYILSSSDDMFIKLWDYEKGW 133          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_CAEEL (Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.719e-51
Identity = 88/132 (66.67%), Postives = 112/132 (84.85%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPLRL++KRKL  RS+RVK VDLHP E W+LA+LY+G V IWNY++QT+ KS EV ++PVR+AKFV RK WVV G+DDM IRV+NYNT+++V  FEAH+DY+R + VHPTLPYV+SSSDDML+K+WDW+  W
Sbjct:    1 MPLRLDVKRKLLARSDRVKCVDLHPVETWLLAALYNGNVHIWNYETQTLVKSFEVCDVPVRAAKFVPRKSWVVTGSDDMHIRVFNYNTLERVHQFEAHSDYLRSLVVHPTLPYVISSSDDMLVKMWDWDNKW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.482e-50
Identity = 88/132 (66.67%), Postives = 112/132 (84.85%), Query Frame = 3
Query:  147 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            MPL+L+IKR+L  RS+RVK VDLHP+EPW+L +LY+G V I NY++Q M K  EV ++PVRSA+FVARK W++ G+DDM IRV+NYNT++KV  FEAH+DY+RC+AVHPT P VL+SSDDMLIKLW+WEK W
Sbjct:    1 MPLKLDIKRRLTSRSDRVKCVDLHPAEPWMLCALYNGHVHIMNYENQQMVKDFEVCDVPVRSARFVARKNWILTGSDDMQIRVFNYNTLEKVHSFEAHSDYLRCIAVHPTQPLVLTSSDDMLIKLWNWEKMW 132          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_YEAST (Coatomer subunit beta' OS=Saccharomyces cerevisiae GN=SEC27 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.841e-45
Identity = 76/130 (58.46%), Postives = 102/130 (78.46%), Query Frame = 3
Query:  153 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            ++L+IK+  + RS+RVK +D HP+EPW+L +LYSG V +WNY++Q   +S +VTE PVR+ KF+ARK W++ G+DD  IRV+NYNT +KV  FEAH DYIR +AVHPT PYVLS SDD+ +KLW+WE  W
Sbjct:    1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPB2_SCHPO (Probable coatomer subunit beta' OS=Schizosaccharomyces pombe GN=sec27 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 5.543e-42
Identity = 71/130 (54.62%), Postives = 100/130 (76.92%), Query Frame = 3
Query:  153 LRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGW 542
            +RL+ +RKL   +ERVK+VD HP+EPW++AS Y+G V IWNY +QT+ +S ++ ++P+R+  F+ARK W V G+DD  +RVYNYNT +KV  FEAH DYIR + VHPT P++L+SSDDM IK ++W+  W
Sbjct:    2 MRLDFQRKLLSHTERVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRSFDINDVPIRACAFIARKNWFVCGSDDFQVRVYNYNTGEKVTQFEAHPDYIRALVVHPTQPFLLTSSDDMTIKCFNWDMSW 131          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_DICDI (Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   ++ RVK +  HP+ PWILASL+SG++ +++Y+ +T+ +  +  E PVR   F   +   V+G DD  I+V+NY     +   + H DYIR V  H   P+++SSSDDM+I++W+W+
Sbjct:    4 KFETKASRVKGLSFHPTRPWILASLHSGSIHLYDYRIKTLLEKFDEHEGPVRGINFHMTQPLFVSGGDDYKIKVWNYKQRRCLFTLKGHKDYIRSVEFHREAPWIVSSSDDMVIRIWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA3_ORYSJ (Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+    +  + PVR   F A +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+    +  + PVR   F A +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWNWQ 123          
The following BLAST results are available for this feature:
BLAST of CX308908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COPB2_BOVIN2.738e-5772.73Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
COPB2_RAT1.359e-5671.97Coatomer subunit beta' OS=Rattus norvegicus GN=Cop... [more]
COPB2_DICDI1.503e-5572.18Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
COPB2_CAEEL1.719e-5166.67Probable coatomer subunit beta' OS=Caenorhabditis ... [more]
COPB2_DROME2.482e-5066.67Coatomer subunit beta' OS=Drosophila melanogaster ... [more]
COPB2_YEAST1.841e-4558.46Coatomer subunit beta' OS=Saccharomyces cerevisiae... [more]
COPB2_SCHPO5.543e-4254.62Probable coatomer subunit beta' OS=Schizosaccharom... [more]
COPA_DICDI1.284e-2239.17Coatomer subunit alpha OS=Dictyostelium discoideum... [more]
COPA3_ORYSJ1.677e-2240.00Coatomer subunit alpha-3 OS=Oryza sativa subsp. ja... [more]
COPA2_ORYSJ1.677e-2240.00Coatomer subunit alpha-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC21005E05Rv AbsLeaSub1 Citrus clementina cDNA clone C21005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308908 ID=CX308908; Name=CX308908; organism=Citrus clementina; type=EST; length=545bp
GCGGGGGCTCCTCATTTTTACAGATACATCACAACGCTAATCCCTCCCTC
CCTCTCTCTATTACACCAAATTCTCTCTCTGGATCTATAATTTACAACTT
CGCCGCGAAAACTTTGATCTCGATTTCGCAAATCAGATAATCGAAGATGC
CTCTCAGACTCGAAATCAAGAGAAAACTTGCTCAAAGATCAGAGAGAGTA
AAGTCTGTGGATTTGCATCCATCTGAACCATGGATTCTAGCAAGTTTGTA
TTCAGGAACTGTGTGTATCTGGAACTACCAGTCACAGACTATGGCTAAGT
CTTCTGAGGTCACTGAGTTACCAGTTAGATCAGCTAAATTTGTGGCCCGC
AAGCAATGGGTAGTTGCAGGAGCTGATGACATGTTTATTCGTGTATACAA
TTACAATACAATGGACAAAGTTAAAGTATTTGAGGCTCATACGGATTACA
TTAGATGTGTGGCTGTTCATCCTACCCTTCCGTATGTGCTGTCATCATCT
GATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGATG
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