CX308908

Overview
NameCX308908
Unique NameCX308908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX308908_ssr41 microsatellite CX308908_ssr41:41..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+    +  + PVR   F A +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+    +  E PVR   F   +   V+G DD  I+V+NY T   +     H DYIR V  H   P+++S+SDD  I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWILASL+SG + +W+Y+  T+    +  E PVR   F   +   V+G DD  I+V+NY     +     H DYIR V  H   P+++S+SDD  I++W+W+
Sbjct:    4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  159 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            +E+  K   RS R K V  HP++PWIL SL++G + +W+Y+  T+    +  + PVR   F   +   V+G DD  + V+NY +   +     H DY+R    H   P++LS SDD  I++W+W+
Sbjct:    1 MEMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQ 125          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  159 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            +++  K   +S R K +  HPS PW+L +L+S T+ +W+Y+  T+    E  E PVR   F   +   V+  DD  I+V++ +T   +     H DY+R V  H  LP+++S+SDD  I++W+W+
Sbjct:    1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+    +  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+    +  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533
            K   +S RVK +  HP  PWIL SL++G + +W+Y+  T+    +  + PVR   F  ++   V+G DD  I+V+NY     +     H DYIR    H   P++LS+SDD  I++W+W+
Sbjct:    4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123          
The following BLAST results are available for this feature:
BLAST of CX308908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COPA1_ORYSJ1.677e-2240.00Coatomer subunit alpha-1 OS=Oryza sativa subsp. ja... [more]
COPA2_ARATH8.322e-2240.00Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
COPA1_ARATH1.854e-2139.17Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
COPA_SCHPO2.050e-2035.20Putative coatomer subunit alpha OS=Schizosaccharom... [more]
COPA_YEAST2.677e-2034.40Coatomer subunit alpha OS=Saccharomyces cerevisiae... [more]
COPA_MOUSE4.566e-2036.67Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_HUMAN4.566e-2036.67Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=... [more]
COPA_BOVIN4.566e-2036.67Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21005E05Rv AbsLeaSub1 Citrus clementina cDNA clone C21005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308908 ID=CX308908; Name=CX308908; organism=Citrus clementina; type=EST; length=545bp
GCGGGGGCTCCTCATTTTTACAGATACATCACAACGCTAATCCCTCCCTC
CCTCTCTCTATTACACCAAATTCTCTCTCTGGATCTATAATTTACAACTT
CGCCGCGAAAACTTTGATCTCGATTTCGCAAATCAGATAATCGAAGATGC
CTCTCAGACTCGAAATCAAGAGAAAACTTGCTCAAAGATCAGAGAGAGTA
AAGTCTGTGGATTTGCATCCATCTGAACCATGGATTCTAGCAAGTTTGTA
TTCAGGAACTGTGTGTATCTGGAACTACCAGTCACAGACTATGGCTAAGT
CTTCTGAGGTCACTGAGTTACCAGTTAGATCAGCTAAATTTGTGGCCCGC
AAGCAATGGGTAGTTGCAGGAGCTGATGACATGTTTATTCGTGTATACAA
TTACAATACAATGGACAAAGTTAAAGTATTTGAGGCTCATACGGATTACA
TTAGATGTGTGGCTGTTCATCCTACCCTTCCGTATGTGCTGTCATCATCT
GATGATATGCTCATAAAGCTTTGGGATTGGGAGAAGGGTTGGATG
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