CX308908
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA1_ORYSJ (Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22 Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWILASL+SG + +W+Y+ T+ + + PVR F A + V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 48/120 (40.00%), Postives = 70/120 (58.33%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWILASL+SG + +W+Y+ T+ + E PVR F + V+G DD I+V+NY T + H DYIR V H P+++S+SDD I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21 Identity = 47/120 (39.17%), Postives = 69/120 (57.50%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWILASL+SG + +W+Y+ T+ + E PVR F + V+G DD I+V+NY + H DYIR V H P+++S+SDD I++W+W+ Sbjct: 4 KFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20 Identity = 44/125 (35.20%), Postives = 70/125 (56.00%), Query Frame = 3 Query: 159 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 +E+ K RS R K V HP++PWIL SL++G + +W+Y+ T+ + + PVR F + V+G DD + V+NY + + H DY+R H P++LS SDD I++W+W+ Sbjct: 1 MEMLTKFESRSSRAKGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDDYKVNVWNYKSRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDDQTIRIWNWQ 125
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_YEAST (Coatomer subunit alpha OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20 Identity = 43/125 (34.40%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 159 LEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 +++ K +S R K + HPS PW+L +L+S T+ +W+Y+ T+ E E PVR F + V+ DD I+V++ +T + H DY+R V H LP+++S+SDD I++W+W+ Sbjct: 1 MKMLTKFESKSTRAKGIAFHPSRPWVLVALFSSTIQLWDYRMGTLLHRFEDHEGPVRGLDFHPTQPIFVSAGDDYTIKVWSLDTNKCLYTLTGHLDYVRTVFFHRELPWIISASDDQTIRIWNWQ 125
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20 Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWIL SL++G + +W+Y+ T+ + + PVR F ++ V+G DD I+V+NY + H DYIR H P++LS+SDD I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_HUMAN (Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20 Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWIL SL++G + +W+Y+ T+ + + PVR F ++ V+G DD I+V+NY + H DYIR H P++LS+SDD I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123
BLAST of CX308908 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20 Identity = 44/120 (36.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 174 KLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSSEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWE 533 K +S RVK + HP PWIL SL++G + +W+Y+ T+ + + PVR F ++ V+G DD I+V+NY + H DYIR H P++LS+SDD I++W+W+ Sbjct: 4 KFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVWNWQ 123 The following BLAST results are available for this feature:
BLAST of CX308908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308908 ID=CX308908; Name=CX308908; organism=Citrus clementina; type=EST; length=545bpback to top |