CX308911

Overview
NameCX308911
Unique NameCX308911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig961 contig Ccv1_Contig961:1..219. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_ASHGO (60S ribosomal protein L30 OS=Ashbya gossypii GN=RPL30 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.571e-11
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            E+IN +LALV+KSGKYTLGYK+ ++SLR  K KLI+++ N P LRKSE+
Sbjct:    8 ENINQKLALVIKSGKYTLGYKSTIKSLRQGKAKLIIIAANTPVLRKSEL 56          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_CANGA (60S ribosomal protein L30 OS=Candida glabrata GN=RPL30 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.358e-11
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN +LALV+KSGK+TLGYK+ ++SLR  K KLI+++ N P LRKSE+
Sbjct:    8 ESINQKLALVVKSGKFTLGYKSTIKSLRQGKSKLIIIAANTPVLRKSEL 56          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.385e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            ESIN+RL LVMKSGKY LG K  L+ LR  K KLI+++NN P LRKSEI
Sbjct:    9 ESINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEI 57          
BLAST of CX308911 vs. ExPASy Swiss-Prot
Match: RL30_KLULA (60S ribosomal protein L30 OS=Kluyveromyces lactis GN=RPL30 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.769e-11
Identity = 30/49 (61.22%), Postives = 41/49 (83.67%), Query Frame = -3
Query:    3 ESINNRLALVMKSGKYTLGYKTVLRSLRSSKGKLILLSNNCPPLRKSEI 149
            E+IN +LALV+KSGKY+LGYK+ ++SLR  K KLI+++ N P LRKSE+
Sbjct:    8 ENINQKLALVVKSGKYSLGYKSTVKSLRQGKAKLIIIAANTPVLRKSEL 56          
The following BLAST results are available for this feature:
BLAST of CX308911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL30_ASHGO2.571e-1163.2760S ribosomal protein L30 OS=Ashbya gossypii GN=RP... [more]
RL30_CANGA3.358e-1163.2760S ribosomal protein L30 OS=Candida glabrata GN=R... [more]
RL30_BRABE4.385e-1167.3560S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30_KLULA9.769e-1161.2260S ribosomal protein L30 OS=Kluyveromyces lactis ... [more]

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Properties
Property NameValue
Genbank descriptionC21005F02Rv AbsLeaSub1 Citrus clementina cDNA clone C21005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308911 ID=CX308911; Name=CX308911; organism=Citrus clementina; type=EST; length=244bp
TCAATCTCTGATTTTCTCAACGGTGGGCAATTATTTGACAAAAGAATCAA
CTTTCCCTTAGAGCTTCTGAGAGATCGAAGAACAGTTTTGTAACCAAGAG
TGTATTTGCCGCTCTTCATCACAAGAGCAAGCCTGTTGTTGATGCTCTCA
TGAGTCTTCTTCGTCTTCTTGCTTGTGACCATTTTCGACTGTTTGGTTGC
ACCAAAAAGACTTTGCGGGAGGCGGCAAAGTAACAAACGACCCG
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