CX308916

Overview
NameCX308916
Unique NameCX308916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:20..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = -1
Query:    3 LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 278
            LF++   S  D SIV Y +   + +      + ++ +FE+W +KH K Y  + EK  RFEIFKDNL++IDE N +N +Y +GLN FAD++N+
Sbjct:   17 LFVYMGLSFGDFSIVGYSQNDLTST------ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSND 102          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.771e-13
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = -1
Query:    3 LFLFTVSSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 278
            LF+    S  D SIV Y +   + +      + ++ +F +W + H K Y  + EK  RFEIFKDNL +IDE N +N +Y +GLN FADL+N+
Sbjct:   17 LFVHMSVSFGDFSIVGYSQDDLTST------ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSND 102          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.619e-13
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = -1
Query:    3 MFLLFLFTVSSALDMSIVSYDKTHESKS-SSWRTDDEVMGMFEAWFVKHGKAY-NALG-EKEKRFEIFKDNLRFIDEHNS---ENRTYKVGLNRFADLTNE 287
            + LL +   ++A DMSI+SY+  H ++      T+ E    ++ W  ++G    NALG E E+RF +F DNL+F+D HN+   E   +++G+NRFADLTNE
Sbjct:   11 LLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYDLWLAENGGGSPNALGGEHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNE 111          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.173e-13
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = -1
Query:    3 DEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 185
            + ++ +F++W +KH K Y ++ EK  RFEIF+DNL +IDE N +N +Y +GLN FADL+N+
Sbjct:   42 ERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSND 102          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = -1
Query:    3 SSALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 260
            +S+ D SIV Y            + D+++ +FE W     KAY  + EK  RFE+FKDNL+ IDE N + ++Y +GLN FADL++E
Sbjct:   26 ASSHDYSIVGYSP------EDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHE 105          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.226e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = -1
Query:    3 SALDMSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNSENRTYKVGLNRFADLTNE 257
            S  D SIV Y +   + +      + ++ +F +W +KH K Y  + EK  RFEIFKDNL++IDE N     Y +GLN F+DL+N+
Sbjct:   24 SYCDFSIVGYSQDDLTST------ERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMINGYWLGLNEFSDLSND 102          
BLAST of CX308916 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.986e-11
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = -1
Query:    6 MAMFLLFL--FTVSSALD----MSIVSYDKTHESKSSSWRTDDEVMGMFEAWFVKH------GKAYNALGEKEKRFEIFKDNLRFIDEHNS---ENRTYKVGLNRFADLTN 293
            MA FLL L  F   +A      MSI+ Y+  H  +    RT+ E    ++ W  +H      G     +GE E+RF +F DNL+F+D HN+   E   +++G+NRFADLTN
Sbjct:   15 MACFLLILAAFAPPAAAAPPDIMSIIRYNAEHGVRGLE-RTEAEARAAYDLWLARHRRGGGGGSRNGFIGEHERRFRVFWDNLKFVDAHNARADERGGFRLGMNRFADLTN 124          
The following BLAST results are available for this feature:
BLAST of CX308916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PAPA1_CARPA8.614e-1542.39Papain OS=Carica papaya PE=1 SV=1[more]
PAPA3_CARPA2.771e-1341.30Caricain OS=Carica papaya PE=1 SV=2[more]
ORYB_ORYSJ3.619e-1340.59Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
PAPA2_CARPA6.173e-1349.18Chymopapain OS=Carica papaya PE=1 SV=2[more]
XCP2_ARATH5.226e-1241.86Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
PAPA4_CARPA5.226e-1241.18Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CYSP1_ORYSJ1.986e-1137.84Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC21005G03Rv AbsLeaSub1 Citrus clementina cDNA clone C21005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308916 ID=CX308916; Name=CX308916; organism=Citrus clementina; type=EST; length=383bp
TCCTCGTTGGTCAAATCAGCAAACCGGTTCAACCCAACCTTGTAGGTCCG
GTTCTCTGAGTTATGTTCATCAATAAACCTAAGATTGTCCTTAAAGATCT
CAAACCTTTTCTCTTTTTCACCCAAAGCGTTATAAGCCTTGCCATGCTTC
ACAAACCAGGCCTCGAACATACCCATAACCTCATCGTCGGTCCTCCAGCT
GCTAGATTTTGACTCATGGGTTTTATCATAAGATACAATCGACATGTCCA
AGGCAGATGATACAGTGAAGAGAAAAAGTAAAAACATGGCCATGGTTGGT
GATCTGAACAAACCCATCTTTGGAGAAAAGAGCTTTTTTTTTCTTTTTGG
GAGAAGAAGATGGATTGATGAGGCAGAGTCCCG
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