CX308936

Overview
NameCX308936
Unique NameCX308936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHEPA (Phosphoserine aminotransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=serC PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = -2
Query:  253 SRCVKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 408
            S+ + EA    +V LKGHRSVGG+RAS+YNAMPLAGV+ LV FM+ F AK+A
Sbjct:  312 SQFLAEAQAAGLVALKGHRSVGGMRASLYNAMPLAGVDALVGFMRAFAAKNA 363          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHEDO (Phosphoserine aminotransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=serC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = -2
Query:  253 SRCVKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 408
            SR + EA +  +V LKGHR VGG+RAS+YNAMPL GV+ LV FM +F  KH+
Sbjct:  312 SRFLAEAERAGLVALKGHRIVGGMRASLYNAMPLEGVQALVTFMSEFATKHS 363          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHEAM (Phosphoserine aminotransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=serC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +KEA    +V LKGHR VGG+RASIYNAMPL GV+ LV FM+ F AKH+
Sbjct:  315 LKEAEALGLVALKGHRIVGGMRASIYNAMPLEGVDALVSFMRSFAAKHS 363          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_STRMK (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=serC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = -2
Query:  256 SRCVKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKH 408
            +R V EA    ++ LKGH+ VGG+RAS+YNAMPLAG E LV FM DFQ +H
Sbjct:  310 ARFVAEAKAAGLLALKGHKVVGGIRASLYNAMPLAGAEALVAFMADFQQRH 360          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_STRM5 (Phosphoserine aminotransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=serC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = -2
Query:  256 SRCVKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKH 408
            +R V EA    ++ LKGH+ VGG+RAS+YNAMPLAG E LV FM DFQ +H
Sbjct:  310 ARFVAEAKAAGLLALKGHKVVGGIRASLYNAMPLAGAEALVAFMADFQQRH 360          
BLAST of CX308936 vs. ExPASy Swiss-Prot
Match: SERC_SHESR (Phosphoserine aminotransferase OS=Shewanella sp. (strain MR-7) GN=serC PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = -2
Query:  253 VKEATKEKMVQLKGHRSVGGLRASIYNAMPLAGVEKLVPFMKDFQAKHA 399
            +KEA    +V LKGHR VGG+RAS+YNAMPL GV  LV FM +F AKH+
Sbjct:  315 LKEAEAASLVALKGHRIVGGMRASLYNAMPLEGVAALVSFMNEFAAKHS 363          
The following BLAST results are available for this feature:
BLAST of CX308936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SERC_SHEPA4.378e-1163.46Phosphoserine aminotransferase OS=Shewanella peale... [more]
SERC_SHEDO5.718e-1159.62Phosphoserine aminotransferase OS=Shewanella denit... [more]
SERC_SHEAM5.718e-1165.31Phosphoserine aminotransferase OS=Shewanella amazo... [more]
SERC_STRMK7.468e-1160.78Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_STRM57.468e-1160.78Phosphoserine aminotransferase OS=Stenotrophomonas... [more]
SERC_SHESR7.468e-1163.27Phosphoserine aminotransferase OS=Shewanella sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC21006B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308936 ID=CX308936; Name=CX308936; organism=Citrus clementina; type=EST; length=415bp
CACTTCTGTTTTTTTTTTTTTTTTTTAGAGAAATATCAGCATTATTGATT
CAGCCAAATTATTCTCAATTATTTTGAATAAGAACGTAGCCTGAAAAATA
CTCAAATACCATACCACGGTAAAAAGCGACTGAAACACTCAATGAGACGG
ACAAGAGAAAAAGCTAAATCCTACATATTTTTCTACTAAAAAAAGGACTC
TGGATTCAAGCCACAGGCAAAGCCAATCAACAACACTAAAGAGAGAAAGT
CAAGCATGCTTTGCCTGGAAATCCTTCATGAAAGGAACCAACTTCTCAAC
GCCTGCCAAAGGCATAGCATTATATATTGAAGCCCTCAATCCTCCAACTG
ACCTATGCCCCTTCAATTGGACCATCTTCTCCTTAGTAGCTTCCTTCACA
CACCGCGAACCTCGG
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