CX308941

Overview
NameCX308941
Unique NameCX308941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length291
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1323 contig Ccv1_Contig1323:297..587. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            KAIFIFVD VLPPT A+MS+IYEE KD+DGFLY+TYSGENTFG+
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFGN 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV N+LPPT AIMSAIYEE KDEDGFLY++YSGENTFG
Sbjct:   75 KAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 AGKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            A KAIF+FV N LPPT A+MSAIYEE KDEDGFLY+TYSGENTFG
Sbjct:   73 AEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            KAIF+FV N LPPT ++MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   75 KAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 138
            KAIF+FV N LPPT ++MSAIYEE KDEDGFLY+TYSGENTFGS
Sbjct:   75 KAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 118          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIP 147
            KAIFIF+D +LPPT A+MS IYEE K EDGFLY+TYSGENTFG+  P
Sbjct:   74 KAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFP 120          
BLAST of CX308941 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1
Query:    7 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 135
            KAIFIFVD VLPPT A+MS+IYEE KDEDGFLY++YSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX308941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ATG8_COCIM2.282e-1581.82Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8D_ARATH2.981e-1586.05Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ2.981e-1586.05Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI2.981e-1586.05Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ARATH2.981e-1582.22Autophagy-related protein 8b OS=Arabidopsis thalia... [more]
ATG8A_ORYSJ2.981e-1581.82Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI2.981e-1581.82Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8_SCLS13.893e-1583.72Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_SCHPO3.893e-1574.47Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_BOTFB3.893e-1583.72Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]

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Properties
Property NameValue
Genbank descriptionC21006C02Rv AbsLeaSub1 Citrus clementina cDNA clone C21006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308941 ID=CX308941; Name=CX308941; organism=Citrus clementina; type=EST; length=291bp
GCGGGAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTACAGG
TGCAATTATGTCTGCCATATACGAAGAGAAAAAGGATGAAGATGGTTTTC
TTTATGTGACTTACAGTGGGGAGAACACATTTGGAAGCCACATCCCAGTT
TAGCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGACCAC
ATTTTTATCTCAATTATCATCCTTGCTTTCCGCTGAATATTCCTTTATCG
GGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATA
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