CX308943
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 1.309e-92 Identity = 149/209 (71.29%), Postives = 175/209 (83.73%), Query Frame = 3 Query: 6 ATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 632 +TR LR+ +P P+LAYP YL RSPGK GSHF+P S LF PSERK + TST CW+ M L+ LSFV GP+ +LK+YG+PY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L L+ S+ KDHYVSD GD+V+Y+TDP L Sbjct: 167 STRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 3.284e-27 Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 3 Query: 45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509 L +P YL++ GK +HFDP S +F ER V+ S + + A+L G+ + G + +YG+P ++ D++TYLHH LP Y EW++LRG L+T+DRD+G+ N++ HD+ THV+HHLF IPHYH EA +A VLG +Y+ Sbjct: 181 LGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25 Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509 L +P YL G+ H+DP ++ ER + S A+ L L+ G ++ +YG+P + +L L+T+L H LP Y EW +LRG L T+DRDYG N + H+I THV HHLF +PHYH +EAT+A +P+LG+YYR Sbjct: 188 LGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25 Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = 3 Query: 12 RFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509 R + + F +L +P YL G+ HF PN+ ++ ER + S A+ L + G ++ LYG+P I +L L+TYL H LP Y EW +LRG L T+DRDYG N + H+I THV HHLF +PHY+ +EAT+A +P+LG YY+ Sbjct: 178 RIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25 Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 3 Query: 45 LAYPFYLWSRS------PGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509 L +P Y W+ + P HF PN+ ++ ER + S A+ L + G ++ LYG+P I +L L+TYL H LP Y EW +LRG L T+DRDYG N + H+I THV HHLF +PHYH +E T+A +P+LG YY+ Sbjct: 188 LGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24 Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = 3 Query: 45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509 + +P YL G+ SH+ P + ++ ER + S V ++ L ++ + G + LL +YG+P I +L +TYL H LP Y EW +L+G L T+DRDYG N + HH THV HHLF +PHYH +EAT A +P+LG+YY+ Sbjct: 192 IGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 5.797e-24 Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3 Query: 42 LLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 617 L +P YL + G+ SHF S +F P D+I S + A L+ S + + + K Y +PY WL L+T+L H + KLP YR W++ RG L T+DR +G F + H + THV HHLF Q+P YH EAT + +LG+YY P + + RS + +V D+GDVV+++ Sbjct: 210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24 Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3 Query: 42 LLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 617 L +P YL + G+ SHF S +F P D+I S + A L+ S + + + K Y +PY WL L+T+L H + KLP YR W++ RG L T+DR +G F + H + THV HHLF Q+P YH EAT + +LG+YY P + + RS + +V D+GDVV+++ Sbjct: 210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399 The following BLAST results are available for this feature:
BLAST of CX308943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308943 ID=CX308943; Name=CX308943; organism=Citrus clementina; type=EST; length=652bpback to top |