CX308943

Overview
NameCX308943
Unique NameCX308943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.309e-92
Identity = 149/209 (71.29%), Postives = 175/209 (83.73%), Query Frame = 3
Query:    6 ATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQTDPQL 632
            +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YG+PY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLRGGLTT+DRDYG FNNIHHDIGTHVIHHLFPQIPHYHL++AT+AA+ VLG+YYREPK SG IP +L   L+ S+ KDHYVSD GD+V+Y+TDP L
Sbjct:  167 STRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASIKKDHYVSDTGDIVFYETDPDL 375          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.284e-27
Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 3
Query:   45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDIG-THVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509
            L +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++TYLHH      LP Y   EW++LRG L+T+DRD+G+ N++ HD+  THV+HHLF  IPHYH  EA +A   VLG +Y+
Sbjct:  181 LGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYK 338          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 3
Query:   45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509
            L +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YG+P  +   +L L+T+L H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +EAT+A +P+LG+YYR
Sbjct:  188 LGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYR 345          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = 3
Query:   12 RFLRFKIPFPLLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509
            R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYG+P  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHY+ +EAT+A +P+LG YY+
Sbjct:  178 RIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQ 345          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 3
Query:   45 LAYPFYLWSRS------PGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNIHHDI-GTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509
            L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYG+P  I   +L L+TYL H      LP Y   EW +LRG L T+DRDYG  N + H+I  THV HHLF  +PHYH +E T+A +P+LG YY+
Sbjct:  188 LGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQ 346          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 61/160 (38.12%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   45 LAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWFNNI-HHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYR 509
            + +P YL     G+      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YG+P  I   +L  +TYL H      LP Y   EW +L+G L T+DRDYG  N + HH   THV HHLF  +PHYH +EAT A +P+LG+YY+
Sbjct:  192 IGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQ 349          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.797e-24
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   42 LLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 617
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
BLAST of CX308943 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   42 LLAYPFYLWSRSPGKS----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWF--NNIHHDIGTHVIHHLFPQIPHYHLIEATEAARPVLGKYYREPKKSGPIPFNLFGDLIRSMSKDHYVSDNGDVVYYQ 617
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ RG L T+DR +G F  +  H  + THV HHLF Q+P YH  EAT   + +LG+YY         P  +   + RS  +  +V D+GDVV+++
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHT--DPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYD------PSPIVVAVWRSFRECRFVEDHGDVVFFK 399          
The following BLAST results are available for this feature:
BLAST of CX308943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_ARATH1.309e-9271.29Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL3.284e-2739.88Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FD6E2_SOYBN2.354e-2538.75Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH2.354e-2538.01Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU5.244e-2538.89Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.526e-2438.13Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORIS5.797e-2434.85Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP7.572e-2434.85Delta(12) fatty acid desaturase OS=Mortierella alp... [more]

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Properties
Property NameValue
Genbank descriptionC21006C04Rv AbsLeaSub1 Citrus clementina cDNA clone C21006C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308943 ID=CX308943; Name=CX308943; organism=Citrus clementina; type=EST; length=652bp
GCGGGGCAACAAGATTTTTGAGATTCAAAATTCCTTTTCCCTTGCTTGCA
TATCCCTTTTATCTTTGGAGTAGAAGTCCGGGGAAGTCTGGTTCTCACTT
TGACCCTAACAGTGACCTGTTTGTCCCAAGTGAGAGGAAGGATGTGATCA
CTTCAACAGTATGCTGGACAGCCATGGCTGCTTTGCTAGTGGGTTTATCA
TTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTATGGCCTTCCATATTG
GATTTTTGTCATGTGGCTGGACCTTGTGACTTACTTGCATCACCATGGGC
ATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAATGGAGTTACTTAAGG
GGAGGGCTCACAACACTTGATCGTGACTATGGATGGTTCAATAACATCCA
CCACGATATTGGAACCCACGTCATACATCACCTCTTCCCTCAGATCCCGC
ATTACCACTTAATAGAAGCAACTGAGGCTGCTAGACCAGTTCTTGGAAAA
TATTACCGTGAGCCAAAGAAATCGGGACCGATACCTTTTAACCTTTTTGG
AGATTTAATTAGAAGCATGAGTAAAGACCACTATGTTAGTGACAATGGCG
ATGTTGTTTACTACCAGACCGACCCACAGCTTAACGGCTCTTCAAATCAG
GG
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