CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SACD2 (Chorismate synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.470e-24
Identity = 54/76 (71.05%), Postives = 58/76 (76.32%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG  +G IIDGCPP I LSE D+Q+DLDRR+PG SR TT RKE D  KI SGV EG TTGTPI
Sbjct:    6 FGKLFTVTTFGESHGLALGAIIDGCPPGIELSEEDLQLDLDRRKPGTSRYTTQRKEADQVKILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_RHOCS (Chorismate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.470e-24
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FGT FR TTFGESHG  +GCI+DG PPR+PL EA +Q  LDRRRPGQSR  T R+E D  +I SGV EG+TTGTP+
Sbjct:    6 FGTLFRFTTFGESHGPAIGCIVDGVPPRLPLDEAFIQGFLDRRRPGQSRFVTQRQEPDAVRILSGVFEGLTTGTPV 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECO7I (Chorismate synthase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.470e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SG+ EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGIFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBPA (Chorismate synthase OS=Vibrio parahaemolyticus GN=aroC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + ++EAD+Q DLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLEITEADLQTDLDRRRPGTSRYTTQRREPDEVKILSGVFEGKTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_VIBHB (Chorismate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=aroC PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DGCPP + ++EAD+Q DLDRRRPG SR TT R+E D  KI SGV EG TTGT I
Sbjct:    7 GQHFRVTTFGESHGIALGCIVDGCPPGLEITEADLQTDLDRRRPGTSRYTTQRREPDEVKILSGVFEGQTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SERP5 (Chorismate synthase OS=Serratia proteamaculans (strain 568) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQIFRVTTFGESHGVALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVRILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PHOLL (Chorismate synthase OS=Photorhabdus luminescens subsp. laumondii GN=aroC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DG PP I ++EAD+QVDLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGLALGCIVDGVPPGIAITEADLQVDLDRRRPGTSRYTTQRREPDQVRILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BURCJ (Chorismate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            GT F VTTFGESHG  +GC+IDGCPP + L+EAD+QV+LDRR+PG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GTLFTVTTFGESHGPAIGCVIDGCPPGMGLTEADIQVELDRRKPGTSRHVTQRQEADEVEILSGVFEGVTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BURA4 (Chorismate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            GT F VTTFGESHG  +GC+IDGCPP + L+EAD+QV+LDRR+PG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GTLFTVTTFGESHGPAIGCVIDGCPPGMGLTEADIQVELDRRKPGTSRHVTQRQEADEVEILSGVFEGVTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALTY (Chorismate synthase OS=Salmonella typhimurium GN=aroC PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_SACD23.470e-2471.05Chorismate synthase OS=Saccharophagus degradans (s... [more]
AROC_RHOCS3.470e-2467.11Chorismate synthase OS=Rhodospirillum centenum (st... [more]
AROC_ECO7I3.470e-2470.67Chorismate synthase OS=Escherichia coli O7:K1 (str... [more]
AROC_VIBPA4.532e-2468.00Chorismate synthase OS=Vibrio parahaemolyticus GN=... [more]
AROC_VIBHB4.532e-2468.00Chorismate synthase OS=Vibrio harveyi (strain ATCC... [more]
AROC_SERP54.532e-2470.67Chorismate synthase OS=Serratia proteamaculans (st... [more]
AROC_PHOLL4.532e-2469.33Chorismate synthase OS=Photorhabdus luminescens su... [more]
AROC_BURCJ4.532e-2468.00Chorismate synthase OS=Burkholderia cepacia (strai... [more]
AROC_BURA44.532e-2468.00Chorismate synthase OS=Burkholderia ambifaria (str... [more]
AROC_SALTY5.919e-2470.67Chorismate synthase OS=Salmonella typhimurium GN=a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
back to top