CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALSV (Chorismate synthase OS=Salmonella schwarzengrund (strain CVM19633) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALPK (Chorismate synthase OS=Salmonella paratyphi A (strain AKU_12601) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALPB (Chorismate synthase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALPA (Chorismate synthase OS=Salmonella paratyphi A GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALNS (Chorismate synthase OS=Salmonella newport (strain SL254) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALHS (Chorismate synthase OS=Salmonella heidelberg (strain SL476) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALG2 (Chorismate synthase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALEP (Chorismate synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALDC (Chorismate synthase OS=Salmonella dublin (strain CT_02021853) GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SALCH (Chorismate synthase OS=Salmonella choleraesuis GN=aroC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.919e-24
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV +GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSI 81
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_SALSV5.919e-2470.67Chorismate synthase OS=Salmonella schwarzengrund (... [more]
AROC_SALPK5.919e-2470.67Chorismate synthase OS=Salmonella paratyphi A (str... [more]
AROC_SALPB5.919e-2470.67Chorismate synthase OS=Salmonella paratyphi B (str... [more]
AROC_SALPA5.919e-2470.67Chorismate synthase OS=Salmonella paratyphi A GN=a... [more]
AROC_SALNS5.919e-2470.67Chorismate synthase OS=Salmonella newport (strain ... [more]
AROC_SALHS5.919e-2470.67Chorismate synthase OS=Salmonella heidelberg (stra... [more]
AROC_SALG25.919e-2470.67Chorismate synthase OS=Salmonella gallinarum (stra... [more]
AROC_SALEP5.919e-2470.67Chorismate synthase OS=Salmonella enteritidis PT4 ... [more]
AROC_SALDC5.919e-2470.67Chorismate synthase OS=Salmonella dublin (strain C... [more]
AROC_SALCH5.919e-2470.67Chorismate synthase OS=Salmonella choleraesuis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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