CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PROMH (Chorismate synthase OS=Proteus mirabilis (strain HI4320) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP +PL++AD+QVDLDRR+PG SR TT R+E D  +I SGV  GVTTGT I
Sbjct:    7 GQLFRVTTFGESHGTALGCIVDGVPPGLPLTQADLQVDLDRRKPGTSRYTTQRREPDQVRILSGVFNGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NITOC (Chorismate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  F VTTFGESHG  +GCI+DGCPP + L E D+Q+DLDRRRPG+SR TT R+E D  +I SGV EG TTGTPI
Sbjct:    7 GKLFTVTTFGESHGPALGCIVDGCPPGLALCETDIQIDLDRRRPGKSRHTTQRREPDQVQILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BURCM (Chorismate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            GT F VTTFGESHG  +GC+IDGCPP + L+EAD+Q +LDRR+PG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GTLFTVTTFGESHGPAIGCVIDGCPPGMGLTEADIQFELDRRKPGTSRHVTQRQEADEVEILSGVFEGVTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BORA1 (Chorismate synthase OS=Bordetella avium (strain 197N) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G+ FRVT FGESHG  +GC++DGCPP +PL  AD+Q +LDRRRPG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GSLFRVTNFGESHGPAIGCVVDGCPPGLPLDAADIQRELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_TERTT (Chorismate synthase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 51/76 (67.11%), Postives = 58/76 (76.32%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG  +GCI+DGCPP I L EA +Q DLDRR+PGQSR TT R+E D  K+ SGV EG +TGTPI
Sbjct:    6 FGKLFTVTTFGESHGLALGCIVDGCPPGIALDEALIQEDLDRRKPGQSRYTTQRREADKVKVLSGVFEGKSTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PROM5 (Chorismate synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  FRV+TFGESHGG VG I+DGCPP++ ++   +Q +LDRRRPGQS+ITTPRKE D  +I SG+ EG+T GTPI
Sbjct:    5 FGKIFRVSTFGESHGGAVGVILDGCPPKLKINIDLIQNELDRRRPGQSKITTPRKEDDKLEILSGLKEGITLGTPI 80          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_POLSJ (Chorismate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VT FGESHG  +GC+IDGCPP + L+EAD+Q DLDRRRPG SR  T R E D  +I SGV EG TTGTPI
Sbjct:    6 FGNLFAVTNFGESHGPAIGCVIDGCPPGLALTEADIQTDLDRRRPGTSRHVTQRNEPDAVEILSGVYEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ESCF3 (Chorismate synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP I L+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGISLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BORPE (Chorismate synthase OS=Bordetella pertussis GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            GT F VT FGESHG  +GC++DGCPP +PL  AD+Q +LDRRRPG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GTLFCVTNFGESHGPAIGCVVDGCPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BORPA (Chorismate synthase OS=Bordetella parapertussis GN=aroC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.249e-23
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            GT F VT FGESHG  +GC++DGCPP +PL  AD+Q +LDRRRPG SR  T R+E D  +I SGV EGVTTGTPI
Sbjct:    7 GTLFCVTNFGESHGPAIGCVVDGCPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTPI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_PROMH1.722e-2366.67Chorismate synthase OS=Proteus mirabilis (strain H... [more]
AROC_NITOC1.722e-2366.67Chorismate synthase OS=Nitrosococcus oceani (strai... [more]
AROC_BURCM1.722e-2366.67Chorismate synthase OS=Burkholderia ambifaria (str... [more]
AROC_BORA11.722e-2365.33Chorismate synthase OS=Bordetella avium (strain 19... [more]
AROC_TERTT2.249e-2367.11Chorismate synthase OS=Teredinibacter turnerae (st... [more]
AROC_PROM52.249e-2364.47Chorismate synthase OS=Prochlorococcus marinus (st... [more]
AROC_POLSJ2.249e-2365.79Chorismate synthase OS=Polaromonas sp. (strain JS6... [more]
AROC_ESCF32.249e-2370.67Chorismate synthase OS=Escherichia fergusonii (str... [more]
AROC_BORPE2.249e-2365.33Chorismate synthase OS=Bordetella pertussis GN=aro... [more]
AROC_BORPA2.249e-2365.33Chorismate synthase OS=Bordetella parapertussis GN... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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