CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_PECCP (Chorismate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIMB (Chorismate synthase OS=Neisseria meningitidis serogroup B GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIMA (Chorismate synthase OS=Neisseria meningitidis serogroup A GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGQLFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIG2 (Chorismate synthase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGQIFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_NEIG1 (Chorismate synthase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG G+GCIIDGCPP + LSEAD+Q DLDRR+PG SR  T R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGQIFTVTTFGESHGAGLGCIIDGCPPGLELSEADIQFDLDRRKPGTSRHVTQRREADQVEILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_HAHCH (Chorismate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 237
            FG  F VTTFGESHG  +GCI+DGCPP +PL+E D+QVDLDRR+PG SR TT R+E D  +I SGV EG TTGTPI
Sbjct:    6 FGKLFTVTTFGESHGLALGCIVDGCPPGLPLTEEDLQVDLDRRKPGTSRHTTQRREPDQVRILSGVFEGKTTGTPI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ERWCT (Chorismate synthase OS=Erwinia carotovora subsp. atroseptica GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_BRASB (Chorismate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=aroC PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.132e-25
Identity = 55/82 (67.07%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   10 FGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGV------SEGVTTGTPI 237
            FG  FRVTTFGESHG  +GC++DGCPPRIPL  A++QVDLDRRRPGQSR TT R+E D  KI SGV         VTTGTPI
Sbjct:    6 FGHMFRVTTFGESHGVAIGCVVDGCPPRIPLEPAEIQVDLDRRRPGQSRFTTQRQEPDQVKILSGVMPDPDTGAQVTTGTPI 87          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_YERPY (Chorismate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_YERPS (Chorismate synthase OS=Yersinia pseudotuberculosis GN=aroC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.193e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G +FRVTTFGESHG  +GCIIDG PP IP++EAD+Q+DLDRRRPG SR TT R+E D  +I SGV EGVTTGT I
Sbjct:    7 GQFFRVTTFGESHGIALGCIIDGVPPGIPITEADIQLDLDRRRPGTSRYTTQRRELDQVRILSGVFEGVTTGTSI 81          
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_PECCP9.132e-2572.00Chorismate synthase OS=Pectobacterium carotovorum ... [more]
AROC_NEIMB9.132e-2569.74Chorismate synthase OS=Neisseria meningitidis sero... [more]
AROC_NEIMA9.132e-2569.74Chorismate synthase OS=Neisseria meningitidis sero... [more]
AROC_NEIG29.132e-2569.74Chorismate synthase OS=Neisseria gonorrhoeae (stra... [more]
AROC_NEIG19.132e-2569.74Chorismate synthase OS=Neisseria gonorrhoeae (stra... [more]
AROC_HAHCH9.132e-2568.42Chorismate synthase OS=Hahella chejuensis (strain ... [more]
AROC_ERWCT9.132e-2572.00Chorismate synthase OS=Erwinia carotovora subsp. a... [more]
AROC_BRASB9.132e-2567.07Chorismate synthase OS=Bradyrhizobium sp. (strain ... [more]
AROC_YERPY1.193e-2470.67Chorismate synthase OS=Yersinia pseudotuberculosis... [more]
AROC_YERPS1.193e-2470.67Chorismate synthase OS=Yersinia pseudotuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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