CX308988

Overview
NameCX308988
Unique NameCX308988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length237
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12468 contig Ccv1_Contig12468:313..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SHISS (Chorismate synthase OS=Shigella sonnei (strain Ss046) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SHIFL (Chorismate synthase OS=Shigella flexneri GN=aroC PE=3 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SHIF8 (Chorismate synthase OS=Shigella flexneri serotype 5b (strain 8401) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_SHIDS (Chorismate synthase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_KLEP7 (Chorismate synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_KLEP3 (Chorismate synthase OS=Klebsiella pneumoniae (strain 342) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOUT (Chorismate synthase OS=Escherichia coli (strain UTI89 / UPEC) GN=aroC PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOSM (Chorismate synthase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOSE (Chorismate synthase OS=Escherichia coli (strain SE11) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
[Close]
BLAST of CX308988 vs. ExPASy Swiss-Prot
Match: AROC_ECOLU (Chorismate synthase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=aroC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:   10 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 234
            G  FRVTTFGESHG  +GCI+DG PP IPL+EAD+Q DLDRRRPG SR TT R+E D  KI SGV EGVTTGT I
Sbjct:    7 GQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSI 81
The following BLAST results are available for this feature:
BLAST of CX308988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 499
Match NameE-valueIdentityDescription
AROC_SHISS2.657e-2472.00Chorismate synthase OS=Shigella sonnei (strain Ss0... [more]
AROC_SHIFL2.657e-2472.00Chorismate synthase OS=Shigella flexneri GN=aroC P... [more]
AROC_SHIF82.657e-2472.00Chorismate synthase OS=Shigella flexneri serotype ... [more]
AROC_SHIDS2.657e-2472.00Chorismate synthase OS=Shigella dysenteriae seroty... [more]
AROC_KLEP72.657e-2472.00Chorismate synthase OS=Klebsiella pneumoniae subsp... [more]
AROC_KLEP32.657e-2472.00Chorismate synthase OS=Klebsiella pneumoniae (stra... [more]
AROC_ECOUT2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain UT... [more]
AROC_ECOSM2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain SM... [more]
AROC_ECOSE2.657e-2472.00Chorismate synthase OS=Escherichia coli (strain SE... [more]
AROC_ECOLU2.657e-2472.00Chorismate synthase OS=Escherichia coli O17:K52:H1... [more]

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Properties
Property NameValue
Genbank descriptionC21007A08Rv AbsLeaSub1 Citrus clementina cDNA clone C21007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308988 ID=CX308988; Name=CX308988; organism=Citrus clementina; type=EST; length=237bp
AAATACATGGATGGGTGTTCCAGTGGTCACCCCTTCAGAAACTCCTGAAT
ATATTTTGCATGTATCAGTCTCCTTTCTAGGGGTTGTAATTCGGCTCTGG
CCTGGCCTCCTTCTGTCAAGGTCAACTTGCATATCAGCTTCTGAAAGAGG
GATCCTGGGAGGGCAACCATCAATAATACAACCAACACCACCTCCATGAG
ACTCTCCAAATGTTGTGACACGAAAATATGTTCCAAA
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